View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7038_low_7 (Length: 481)
Name: NF7038_low_7
Description: NF7038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7038_low_7 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 10 - 472
Target Start/End: Complemental strand, 38862806 - 38862344
Alignment:
| Q |
10 |
gttggtccagatattcagcacccaaatcctcaaaaacaaacacattttgagaattaatattggtctcaatctgaatttgatcactatgatattcactttt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38862806 |
gttggtccagatattcagcacccaaatcctcaaaaacaaacaaattttgagaattaatattggtctcaatctgaatttgatcactatgatattcactttt |
38862707 |
T |
|
| Q |
110 |
gattctctttgtacttaccttattggacttttttctcatgctatgttttcttttgagtgccaatacaggtgaagtaccttcatccaaaggcttagaatta |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
38862706 |
gattctctttgtacttaccttattggacttttttctcatgctatgttttcttttgagtgccaatacaggtgaagtgccttcatccaaaggcttagaatta |
38862607 |
T |
|
| Q |
210 |
ctagccatttctttaagtgattctctcactacttcttcaggaaaattcaacactgccaatgaacctcttgttgaaaaagctgcttgatcataagctaaag |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38862606 |
ctagccatttctttaagtgattctctcactacttcttcaggaaaattcaacactgccaatgaacctcttgttgaaaaagctgcttgatcataagctaaag |
38862507 |
T |
|
| Q |
310 |
cagctgcttcggccgtgtcgaatgttccaatccacactctaacaccttttcttgttgaatctcttatctccgccgcaaattttccccatggcctagttct |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38862506 |
cagctgcttcggccgtgtcgaatgttccaatccacactctaacaccttttcttgttgaatctcttatctccgcggcaaattttccccatggcctagttct |
38862407 |
T |
|
| Q |
410 |
tactcctctaaatgctcttttcttactttccttaatcggcggcggtggaggtggtgatgatgt |
472 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38862406 |
tactcctctaaatgctcttttcttactttccttaatcggcggcggtggaggtggtgatgatgt |
38862344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 285 - 397
Target Start/End: Complemental strand, 38830810 - 38830698
Alignment:
| Q |
285 |
aaagctgcttgatcataagctaaagcagctgcttcggccgtgtcgaatgttccaatccacactctaacaccttttcttgttgaatctcttatctccgccg |
384 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || || || ||||||||||||||||| | |||||| |||||||||| || |||||||| || | |
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|
| T |
38830810 |
aaagctgcttggtcataagctaaagcagctgcttcagctgtatcaaatgttccaatccacacacgaacaccatttcttgttgtgtcccttatctctgctg |
38830711 |
T |
|
| Q |
385 |
caaattttcccca |
397 |
Q |
| |
|
| ||||||||||| |
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|
| T |
38830710 |
cgaattttcccca |
38830698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 15 - 445
Target Start/End: Complemental strand, 19840935 - 19840505
Alignment:
| Q |
15 |
tccagatattcagcacccaaatcctcaaaaacaaacacattttgagaattaatattggtctcaatctgaatttgatcactatgatattcacttttgattc |
114 |
Q |
| |
|
||||||||||| | ||||||||||||||| ||||||||||||||||| ||| ||||||| || |||||||| |||||||||||| ||| |||| ||| |
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|
| T |
19840935 |
tccagatattctgaacccaaatcctcaaacacaaacacattttgagatttagtattggtttctctctgaattcgatcactatgatgatcagttttaattt |
19840836 |
T |
|
| Q |
115 |
tctttgtacttaccttattggacttttttctcatgctatgttttcttttgagtgccaatacaggtgaagtaccttcatccaaaggcttagaattactagc |
214 |
Q |
| |
|
| ||| |||| |||||||||| ||| ||||| |||||||| || | |||||| ||||| ||||||||||| ||||||||||||||||| |||| |
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|
| T |
19840835 |
tttttttactaaccttattgggtgatttcctcattacgtgttttctctttattgccaacacaggcgaagtaccttcttccaaaggcttagaatttctaga |
19840736 |
T |
|
| Q |
215 |
catttctttaagtgattctctcactacttcttcaggaaaattcaacactgccaatgaacctcttgttgaaaaagctgcttgatcataagctaaagcagct |
314 |
Q |
| |
|
||||||||| ||||||||| | ||||||||||| |||||||||||||| |||||||||||||||| | || |||| ||||| || ||||||||||||||| |
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|
| T |
19840735 |
catttctttgagtgattctttaactacttcttctggaaaattcaacacagccaatgaacctcttgctaaataagcggcttggtcgtaagctaaagcagct |
19840636 |
T |
|
| Q |
315 |
gcttcggccgtgtcgaatgttccaatccacactctaacaccttttcttgttgaatctcttatctccgccgcaaattttccccatggcctagttcttactc |
414 |
Q |
| |
|
|||||||||||| ||||||||||| ||| |||||| | |||||||||||||| || |||||||||||||| ||||| ||||||||||| ||||||| | |
|
|
| T |
19840635 |
tcttcggccgtgttgaatgttccaagccatactctagccccttttcttgttgagtcccttatctccgccgcgaatttcccccatggccttgttcttatac |
19840536 |
T |
|
| Q |
415 |
ctctaaatgctcttttcttactttccttaat |
445 |
Q |
| |
|
||||||| | ||||| |||||||| ||||| |
|
|
| T |
19840535 |
ctctaaacacccttttattactttctttaat |
19840505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 19719655 - 19720088
Alignment:
| Q |
18 |
agatattcagcacccaaatcctcaaaaacaaacacattttgagaattaatattggtctcaatctgaatttgatcactatgatattcacttttgattctct |
117 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||| ||| ||| |||||||||| ||| || |||||| || || ||| |||| ||| ||| |
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|
| T |
19719655 |
agatattcagcacccaaatcttcaaacacaaacacatttttagatttagtattggtctctctctttgttcgatcaccattatgatcagttttcattttct |
19719754 |
T |
|
| Q |
118 |
ttgtacttaccttattggacttttttctcatgctatgttttcttttgagtgccaatacaggtgaag------taccttcatccaaaggcttagaattact |
211 |
Q |
| |
|
|| | || |||||||||| ||||||| || | | |||||| || | |||||| ||||| |||| ||||||| || ||||||| |||||| || |
|
|
| T |
19719755 |
ttttgctaaccttattgggtgattttctcttgatgtattttctctttattgccaacacaggggaagtagaagtaccttcttctaaaggctcagaatttct |
19719854 |
T |
|
| Q |
212 |
agccatttctttaagtgattctctcactacttcttcaggaaaattcaacactgccaatgaacctcttgttgaaaaagctgcttgatcataagctaaagca |
311 |
Q |
| |
|
|||||||||||| ||| ||||| | ||||| || || ||||||||||||||||||||||||||||||| | ||||||| ||||| || |||||||||||| |
|
|
| T |
19719855 |
agccatttctttgagtaattctttaactacatcctctggaaaattcaacactgccaatgaacctcttgctaaaaaagcagcttggtcgtaagctaaagca |
19719954 |
T |
|
| Q |
312 |
gctgcttcggccgtgtcgaatgttccaatccacactctaacaccttttcttgttgaatctcttatctccgccgcaaattttccccatggcctagttctta |
411 |
Q |
| |
|
||| |||||||||||| ||||||||||| ||| |||||| | |||||||||||||| || |||||||||||||| ||||| ||||||||||| ||| || |
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|
| T |
19719955 |
gcttcttcggccgtgttgaatgttccaagccatactctagccccttttcttgttgagtcccttatctccgccgcgaatttcccccatggccttcttcgta |
19720054 |
T |
|
| Q |
412 |
ctcctctaaatgctcttttcttactttccttaat |
445 |
Q |
| |
|
||||||||||| | ||| | |||||||| ||||| |
|
|
| T |
19720055 |
ctcctctaaatacccttgtgttactttctttaat |
19720088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 155 - 445
Target Start/End: Original strand, 19892689 - 19892979
Alignment:
| Q |
155 |
ttttcttttgagtgccaatacaggtgaagtaccttcatccaaaggcttagaattactagccatttctttaagtgattctctcactacttcttcaggaaaa |
254 |
Q |
| |
|
|||||| |||| |||||| ||||| ||||||||||| || ||||||| |||||| ||||||||||||| ||||| ||| | ||||| || || |||||| |
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|
| T |
19892689 |
ttttctcttgattgccaacacaggagaagtaccttcttctaaaggctcagaatttatagccatttctttgagtgaatctttaactacatcctccggaaaa |
19892788 |
T |
|
| Q |
255 |
ttcaacactgccaatgaacctcttgttgaaaaagctgcttgatcataagctaaagcagctgcttcggccgtgtcgaatgttccaatccacactctaacac |
354 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||| ||||| |||||||||||||| ||| |||| |||||| ||||||||||| ||| || ||| | | |
|
|
| T |
19892789 |
ttcaacactgccaatgaaccttttgctgaaaaagcggcttggtcataagctaaagcggcttcttcctccgtgttgaatgttccaagccataccctagccc |
19892888 |
T |
|
| Q |
355 |
cttttcttgttgaatctcttatctccgccgcaaattttccccatggcctagttcttactcctctaaatgctcttttcttactttccttaat |
445 |
Q |
| |
|
|||||||||| || || |||||||| ||||| ||||| ||||||||||| ||| ||||||||||| | ||||| |||||||| ||||| |
|
|
| T |
19892889 |
cttttcttgtcgagtcccttatctcggccgcgaatttcccccatggccttcttcgtactcctctaagcacccttttgttactttctttaat |
19892979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 19892540 - 19892598
Alignment:
| Q |
18 |
agatattcagcacccaaatcctcaaaaacaaacacattttgagaattaatattggtctc |
76 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||| || ||| ||| |||||||||| |
|
|
| T |
19892540 |
agatattcagcacccaaatcttcaaagacaaacacatgtttagatttagtattggtctc |
19892598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 5e-51; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 214 - 400
Target Start/End: Original strand, 30623817 - 30624003
Alignment:
| Q |
214 |
ccatttctttaagtgattctctcactacttcttcaggaaaattcaacactgccaatgaacctcttgttgaaaaagctgcttgatcataagctaaagcagc |
313 |
Q |
| |
|
|||| ||||| | |||||| ||||| || | ||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30623817 |
ccatatctttcaatgattccctcacaacatgttcaggaaaattcaacactgccattgatcctcttgttgataaagctgcttgatcataagctaaagcagc |
30623916 |
T |
|
| Q |
314 |
tgcttcggccgtgtcgaatgttccaatccacactctaacaccttttcttgttgaatctcttatctccgccgcaaattttccccatgg |
400 |
Q |
| |
|
||||| || || || ||||| |||||||| ||||||||||||||||||||||| |||||||| ||||| || |||||||||||||| |
|
|
| T |
30623917 |
agcttcagctgtatcaaatgtaccaatccaaactctaacaccttttcttgttgagtctcttatttccgctgcgaattttccccatgg |
30624003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 214 - 400
Target Start/End: Original strand, 30629448 - 30629634
Alignment:
| Q |
214 |
ccatttctttaagtgattctctcactacttcttcaggaaaattcaacactgccaatgaacctcttgttgaaaaagctgcttgatcataagctaaagcagc |
313 |
Q |
| |
|
|||| ||||| | |||||| ||||| || | ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
30629448 |
ccatatctttcaatgattccctcacaacatgttcaggaaaattcaacactgccattgatcctcttgttgataaagctgcttgatcataagctaaagctgc |
30629547 |
T |
|
| Q |
314 |
tgcttcggccgtgtcgaatgttccaatccacactctaacaccttttcttgttgaatctcttatctccgccgcaaattttccccatgg |
400 |
Q |
| |
|
|||||| || || || ||||| |||||||| ||||||||||| ||||| ||||| |||||||| ||||| || |||||||||||||| |
|
|
| T |
30629548 |
tgcttcagctgtatcaaatgtaccaatccaaactctaacaccatttctagttgagtctcttatttccgctgcgaattttccccatgg |
30629634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 400
Target Start/End: Complemental strand, 33042668 - 33042550
Alignment:
| Q |
282 |
gaaaaagctgcttgatcataagctaaagcagctgcttcggccgtgtcgaatgttccaatccacactctaacaccttttcttgttgaatctcttatctccg |
381 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| || | || || ||||| | |||||| || | || || || || |||||||||||||| | |
|
|
| T |
33042668 |
gaaaaagctgcttgatcataagccaaagcagcagcttctgcactatcaaaggttcctagccacaccctcattccattcctcgtcgaatctcttatctctg |
33042569 |
T |
|
| Q |
382 |
ccgcaaattttccccatgg |
400 |
Q |
| |
|
| |||||||| |||||||| |
|
|
| T |
33042568 |
ctgcaaatttcccccatgg |
33042550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 419
Target Start/End: Original strand, 4420143 - 4420277
Alignment:
| Q |
285 |
aaagctgcttgatcataagctaaagcagctgcttcggccgtgtcgaatgttccaatccacactctaacaccttttcttgttgaatctcttatctccgccg |
384 |
Q |
| |
|
||||| |||| ||||||||||||||||||| ||| || || || ||||| |||| ||| ||||| |||||| ||| ||||||||| || || || | |
|
|
| T |
4420143 |
aaagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactcttgaacctttctttgatgaatctctaatttcagctg |
4420242 |
T |
|
| Q |
385 |
caaattttccccatggcctagttcttactcctcta |
419 |
Q |
| |
|
|| |||||||||||||||| | |||||||||||| |
|
|
| T |
4420243 |
catattttccccatggccttctccttactcctcta |
4420277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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