View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7038_low_8 (Length: 454)

Name: NF7038_low_8
Description: NF7038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7038_low_8
NF7038_low_8
[»] chr3 (13 HSPs)
chr3 (265-454)||(17953833-17954022)
chr3 (146-270)||(17954067-17954178)
chr3 (271-355)||(17715507-17715591)
chr3 (14-78)||(17954247-17954311)
chr3 (271-355)||(19016736-19016820)
chr3 (151-207)||(17711381-17711438)
chr3 (151-207)||(19012638-19012695)
chr3 (146-207)||(14897353-14897414)
chr3 (147-207)||(18145376-18145436)
chr3 (14-47)||(11201265-11201298)
chr3 (14-59)||(19435665-19435711)
chr3 (406-446)||(19438997-19439037)
chr3 (15-58)||(34494055-34494099)
[»] chr8 (1 HSPs)
chr8 (14-59)||(18983096-18983141)
[»] chr2 (2 HSPs)
chr2 (14-59)||(45333333-45333378)
chr2 (14-58)||(35111032-35111077)
[»] chr6 (1 HSPs)
chr6 (14-52)||(14011709-14011747)
[»] chr4 (1 HSPs)
chr4 (20-58)||(27732946-27732984)
[»] chr7 (1 HSPs)
chr7 (14-58)||(36263708-36263753)
[»] scaffold0007 (1 HSPs)
scaffold0007 (15-59)||(61234-61279)
[»] chr1 (1 HSPs)
chr1 (14-59)||(17478214-17478260)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 8e-96; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 265 - 454
Target Start/End: Complemental strand, 17954022 - 17953833
Alignment:
Q  265 aaaatatgaaattcattgccggaatcgaacaagaccgcatttgaacgatttgatttgattttatgcccaagaaataaagttgtccaatccaaacggatta 364  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17954022 aaaatatgaaattcattgccagaatcgaacaagaccgcatttgaacgatttgatttgattttattcccaagaaataaagttgtccaatccaaacggatta 17953923  T
Q  365 atttggattcaggctttgttcaatgaacacacctaaagcagggaagactataaatttttgagtcaatgatatgaatggtgtcgtgacaaa 454  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17953922 atttggattcaggctttgttcaatgaacacacctaaagcagagaagactataaatttttgagtcaatgatatgaatggtgtcgtgacaaa 17953833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 146 - 270
Target Start/End: Complemental strand, 17954178 - 17954067
Alignment:
Q  146 taatattagcttaatgaaaaaggaaatagctccgaacaagacttttgaaaaagtaaagaagatttgcaaagaagactaggggtttcaagattgaacttgt 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||             |||||||||||||||||||||||||    
T  17954178 taatattagcttaatgaaaaaggaaatagctccgaacaagactttagaaaaagtaaagaaga-------------ctaggggtttcaagattgaacttgt 17954092  T
Q  246 aactatccaaatatgaataaaaata 270  Q
    |||||||||||||||||||||||||    
T  17954091 aactatccaaatatgaataaaaata 17954067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 271 - 355
Target Start/End: Original strand, 17715507 - 17715591
Alignment:
Q  271 tgaaattcattgccggaatcgaacaagaccgcatttgaacgatttgatttgattttatgcccaagaaataaagttgtccaatcca 355  Q
    ||||||| |||||| ||| ||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||    
T  17715507 tgaaatttattgccagaaccgaacaaaacggcatttgaacggtttgagttgattttatgcccaagaaataaagttctccaatcca 17715591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 17954311 - 17954247
Alignment:
Q  14 ttctagttcgtgcgccggtcacgattagtgttttgggtcgtgacagattatatgctaatgggaaa 78  Q
    |||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  17954311 ttctagttcgtgtgccggttacgatcagtgttttgggtcgtgacagattatatgctaatgggaaa 17954247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 271 - 355
Target Start/End: Original strand, 19016736 - 19016820
Alignment:
Q  271 tgaaattcattgccggaatcgaacaagaccgcatttgaacgatttgatttgattttatgcccaagaaataaagttgtccaatcca 355  Q
    ||||||| |||||| ||| ||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||    
T  19016736 tgaaatttattgccagaaccgaacaaaacggcatttgaacggtttgagttgattttatgcccaagaaataaagttctccaatcca 19016820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 17711381 - 17711438
Alignment:
Q  151 ttagcttaatgaaaaaggaaa-tagctccgaacaagacttttgaaaaagtaaagaaga 207  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17711381 ttagcttaatgaaaaaggaaaatagctccgaacaagacttttgaaaaagtaaagaaga 17711438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 19012638 - 19012695
Alignment:
Q  151 ttagcttaatgaaaaaggaaa-tagctccgaacaagacttttgaaaaagtaaagaaga 207  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19012638 ttagcttaatgaaaaaggaaaatagctccgaacaagacttttgaaaaagtaaagaaga 19012695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 14897353 - 14897414
Alignment:
Q  146 taatattagcttaatgaaaaaggaaatagctccgaacaagacttttgaaaaagtaaagaaga 207  Q
    |||||||||||||| |||||||||||||| ||| ||||||||||||||||||  ||||||||    
T  14897353 taatattagcttaaagaaaaaggaaatagatccaaacaagacttttgaaaaatcaaagaaga 14897414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 18145436 - 18145376
Alignment:
Q  147 aatattagcttaatgaaaaaggaaatagctccgaacaagacttttgaaaaagtaaagaaga 207  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||| ||||  ||||||||    
T  18145436 aatattagcttaaagaaaaaggaaatagctccaaacaagacttttggaaaaacaaagaaga 18145376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 11201265 - 11201298
Alignment:
Q  14 ttctagttcgtgcgccggtcacgattagtgtttt 47  Q
    ||||||||||||||||| ||||||||||||||||    
T  11201265 ttctagttcgtgcgccgatcacgattagtgtttt 11201298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 19435665 - 19435711
Alignment:
Q  14 ttctagttcgtgcgccggtcacgattagtg--ttttgggtcgtgacag 59  Q
    |||||||||||||||||||||||||| |||  ||||||||||||||||    
T  19435665 ttctagttcgtgcgccggtcacgatt-gtgaattttgggtcgtgacag 19435711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 446
Target Start/End: Complemental strand, 19439037 - 19438997
Alignment:
Q  406 ggaagactataaatttttgagtcaatgatatgaatggtgtc 446  Q
    |||||||| |||||||| |||||||||||||||||| ||||    
T  19439037 ggaagactttaaattttggagtcaatgatatgaatgttgtc 19438997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 34494099 - 34494055
Alignment:
Q  15 tctagttcgtgcgccggtcacgattagtg-ttttgggtcgtgaca 58  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||    
T  34494099 tctagttcgtgcgccggtcacgatgtgtgtttttgggtcgtgaca 34494055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 18983096 - 18983141
Alignment:
Q  14 ttctagttcgtgcgccggtcacgattagtgttttgggtcgtgacag 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  18983096 ttctagttcgtgcgccggtcacgattagtgttttgggtcgtgacag 18983141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 45333333 - 45333378
Alignment:
Q  14 ttctagttcgtgcgccggtcacgattagtgttttgggtcgtgacag 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  45333333 ttctagttcgtgcgccggtcacgattagtgttttgggtcgtgacag 45333378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 35111032 - 35111077
Alignment:
Q  14 ttctagttcgtgcgccggtcacgattagtg-ttttgggtcgtgaca 58  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||    
T  35111032 ttctagttcgtacgccggtcacgattagtgtttttgggtcgtgaca 35111077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 14011709 - 14011747
Alignment:
Q  14 ttctagttcgtgcgccggtcacgattagtgttttgggtc 52  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  14011709 ttctagttcgtgcgccgatcacgattagtgttttgggtc 14011747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 27732984 - 27732946
Alignment:
Q  20 ttcgtgcgccggtcacgattagtgttttgggtcgtgaca 58  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  27732984 ttcgtgcgccggtcatgattagtgttttgggtcgtgaca 27732946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 36263753 - 36263708
Alignment:
Q  14 ttctagttcgtgcgccggtcacgattagtg-ttttgggtcgtgaca 58  Q
    ||||||||||||||||||||||||||| || |||||||||||||||    
T  36263753 ttctagttcgtgcgccggtcacgattaatgtttttgggtcgtgaca 36263708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 61234 - 61279
Alignment:
Q  15 tctagttcgtgcgccggtcacgattagtg-ttttgggtcgtgacag 59  Q
    |||||||||||||||||||||||| |||| |||| |||||||||||    
T  61234 tctagttcgtgcgccggtcacgataagtgtttttaggtcgtgacag 61279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 17478260 - 17478214
Alignment:
Q  14 ttctagttcgtgcgccggtcacgattagtg--ttttgggtcgtgacag 59  Q
    |||||||||||||||||||||||||| |||  ||||||||||||||||    
T  17478260 ttctagttcgtgcgccggtcacgatt-gtgaattttgggtcgtgacag 17478214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University