View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7038_low_9 (Length: 397)
Name: NF7038_low_9
Description: NF7038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7038_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 10356375 - 10356482
Alignment:
| Q |
18 |
actatcactccttactggctcccgcttcattatgttgtcattgccgcataaaagtttccaaccctaagcttcaaaagatgcttcttcttttttatgaatt |
117 |
Q |
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| T |
10356375 |
actatcactccttactggctcccgtttcattatgttgtcgttgccgcataaaagtttccaaccctaagcttcaaaagatgcttctt-ttgtttacaaatt |
10356473 |
T |
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| Q |
118 |
tgagatatg |
126 |
Q |
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| T |
10356474 |
tgagatatg |
10356482 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 391
Target Start/End: Complemental strand, 22008107 - 22008050
Alignment:
| Q |
334 |
acgaagataggcaaaacaaaatgtaaattagacctaacatgacacctaaactccaaac |
391 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||| |||||| |||| |
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| T |
22008107 |
acgaagataggcaaaacaaaatgcaaataagacctaacatgacaccaaaactcaaaac |
22008050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 22008138 - 22008107
Alignment:
| Q |
18 |
actatcactccttactggctcccgcttcatta |
49 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
22008138 |
actatcactccttactggctcccgcttcatta |
22008107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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