View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7039_high_3 (Length: 245)
Name: NF7039_high_3
Description: NF7039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7039_high_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 132 - 245
Target Start/End: Original strand, 51109877 - 51109990
Alignment:
| Q |
132 |
cttgggatgttattagcaagtgttacactgctataataattaaatgtcaaccaaaaaataataaatatggtcttcatcttttgacatctacacgaaatcc |
231 |
Q |
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| T |
51109877 |
cttgggatgtaattagcaagtgttacactgctataataattaaatgtcaaccaaaaaataataaatatggtcttcatcttttgacatctacacgaaatcc |
51109976 |
T |
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| Q |
232 |
taagtgcatcgtga |
245 |
Q |
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| T |
51109977 |
taagtgcatcgtga |
51109990 |
T |
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Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 51109764 - 51109835
Alignment:
| Q |
4 |
aggtaatacaactataattcttgctttagagtaaaatgggtgaatgttctttgtgagaatttcaagcttact |
75 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51109764 |
aggtaatacaactataattcttgctttagagtaaaatgggtgaatgttctttgtgagaatttcaagcttact |
51109835 |
T |
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