View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7039_low_1 (Length: 510)
Name: NF7039_low_1
Description: NF7039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7039_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 5e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 3 - 255
Target Start/End: Complemental strand, 33588161 - 33587914
Alignment:
| Q |
3 |
ctataaattttagcctaagacctctattttaccgaatatttcttatctacccttacaaacagatagcgatagcgatagcgatatgttagtttagagatta |
102 |
Q |
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| T |
33588161 |
ctatgaatttttgcctaaaacctctattttaccgaatatttcttatctacccttgcaaacagatagcgatagcgata------tgttagtttagagatta |
33588068 |
T |
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| Q |
103 |
aatcgaagatttatttaaaataaaattaagaagagatattaagtgttgactannnnnnnnnnn-aaggttcattttcattcaataggagcagtattcttc |
201 |
Q |
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| T |
33588067 |
aatcgaagatttatttaaaataaaattaagaagacatattaagtgttgactaatttttttttttaaggttcattttcattcaataggagcagtattcttc |
33587968 |
T |
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| Q |
202 |
ttgttgctagttttgtgcggttccttcccattgttttgtttgcatttgtcttct |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33587967 |
ttgttgctagttttgtgcggttccttcccattgttttgtttgcatttgtcttct |
33587914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 372 - 497
Target Start/End: Complemental strand, 33587803 - 33587678
Alignment:
| Q |
372 |
gtctcattcctcttccctcatttcccttccattcccgaatcacccacaaaccccttcaccttcaaacccctcttctcctttaccccaagattcgttcttt |
471 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33587803 |
gtctcaatcctcttccctcatttcccttccattcccgaatcacccacaaaccccttcaccttcaaacccctcttctcctttaccccaagattcgttcttt |
33587704 |
T |
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| Q |
472 |
gcgtcaagaaatcagaggtaattatt |
497 |
Q |
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| T |
33587703 |
gcgtcaagaaatcagaggtaattatt |
33587678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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