View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7039_low_3 (Length: 410)
Name: NF7039_low_3
Description: NF7039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7039_low_3 |
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| [»] scaffold0594 (1 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 16814116 - 16814518
Alignment:
| Q |
1 |
gtgctatagttgacaccaggtttcttaattggtttggtggatgatgataggcctttgttgagagttttgtaaacctgacctaagggtatatcatcataac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16814116 |
gtgctatagttgacaccaggtttcttaattggtttggtggatgatgataggcctttgttgagagttttgtaaacctgacctaagggtatatcatcataac |
16814215 |
T |
|
| Q |
101 |
tagatgatgcagaagaggatgatagggtggttgactgtgatatggaggtggaactagattctatatcaatcacattggcagagtgaagagaattagtatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16814216 |
tagatgatgcagaagaggatgatagggtggttgactgtgatatggaggtggaactagattctatatcaatcacattggcagagtgaagagaattagtatt |
16814315 |
T |
|
| Q |
201 |
acctcttgaagcttctgagttgacagcttctgatgcaacagtcatttccttctgaactccttcagaggtcatcagctgcagattttcagcttcagttgta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16814316 |
acctcttgaagcttctgagttgacagcttctgatgcaacagtcatttccttctgaactccttcagaggtcatcagctgcagattttcagcttcagttgta |
16814415 |
T |
|
| Q |
301 |
gcaagctcttgtacaacatcagcaacatctatgaccttctaagcatccacaccagcatcttttctagcaatgcttgatgcaggaacttcaatggcctatg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
16814416 |
gcaagctcttgtacaacatcagcaacatctatgaccttctaagcatccacaccagcatcttttctagcaatgcttgatgcaggaacttcaatgtcctttg |
16814515 |
T |
|
| Q |
401 |
cta |
403 |
Q |
| |
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||| |
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|
| T |
16814516 |
cta |
16814518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 17255361 - 17255295
Alignment:
| Q |
151 |
gaactagattctatatcaatcacattggcagagtgaagagaattagtattacctcttgaagcttctg |
217 |
Q |
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|||||||||||||| || ||||| || | |||||| ||||||| | |||||||||||||||||||| |
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| T |
17255361 |
gaactagattctatttctatcactttagtagagtgtagagaataaagattacctcttgaagcttctg |
17255295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 17221758 - 17221685
Alignment:
| Q |
145 |
gaggtggaactagattctatatcaatcacattggcagagtgaagagaattagtattacctcttgaagcttctga |
218 |
Q |
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||||| |||||||||||||| || || | ||| ||| ||| ||||||| || ||||||||||||||||||||| |
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| T |
17221758 |
gaggtagaactagattctatttctataatattagcattgtgtagagaatcaggattacctcttgaagcttctga |
17221685 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 24379485 - 24379558
Alignment:
| Q |
145 |
gaggtggaactagattctatatcaatcacattggcagagtgaagagaattagtattacctcttgaagcttctga |
218 |
Q |
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| T |
24379485 |
gaggtagaactagattctatttctatgattttagcagagtgtagagaatcaggattacctcttgaagcttctga |
24379558 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 24848397 - 24848324
Alignment:
| Q |
145 |
gaggtggaactagattctatatcaatcacattggcagagtgaagagaattagtattacctcttgaagcttctga |
218 |
Q |
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||||| |||||||||||||| || || | ||| ||| ||| ||||||| || ||||||||||||||||||||| |
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| T |
24848397 |
gaggtagaactagattctatttctatgatattagcattgtgtagagaatcaggattacctcttgaagcttctga |
24848324 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0594 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0594
Description:
Target: scaffold0594; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 5418 - 5342
Alignment:
| Q |
154 |
ctagattctatatcaatcacattggcagagtgaagagaattagtattacctcttgaagcttctgagttgacagcttc |
230 |
Q |
| |
|
||||||||||||| ||| |||| | |||||| |||||| || |||||||||||||||||||||||| | |||||| |
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| T |
5418 |
ctagattctatattaataacatcagtagagtgtggagaatcaggattacctcttgaagcttctgagttaagagcttc |
5342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 233
Target Start/End: Complemental strand, 28686 - 28489
Alignment:
| Q |
32 |
gtttggtggatgatgataggcctttgttgagagttttgtaaacctgacctaagggtatatcatcataactagatgatgcagaagaggatgatagggtggt |
131 |
Q |
| |
|
|||||||||||| ||| ||||||||||| | || | | |||| || ||||| || ||||||||||| |||||||| | | ||||||||||| ||||| |
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| T |
28686 |
gtttggtggatggtgaaaggcctttgttaatagatgtataaatttggcctaaaggaatatcatcatagctagatgaggttaaggaggatgatagtgtggt |
28587 |
T |
|
| Q |
132 |
tgactgtgatatggaggtggaactagattctatatcaatcacattggcagagtgaagagaattagtattacctcttgaagcttctgagttgacagcttct |
231 |
Q |
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||| | || | ||||| |||||||||||||| || |||| ||| |||| |||||| || ||||||||||||||||| || || ||||||||| |
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| T |
28586 |
tgagagagagacagaggtagaactagattctat----ataacatcagcatagtgtggagaatcaggattacctcttgaagcttttggattaacagcttct |
28491 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 218
Target Start/End: Original strand, 15141735 - 15141807
Alignment:
| Q |
146 |
aggtggaactagattctatatcaatcacattggcagagtgaagagaattagtattacctcttgaagcttctga |
218 |
Q |
| |
|
|||| |||||||||||||| || || || || |||| ||| |||||||||| ||||||||||||| ||||||| |
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|
| T |
15141735 |
aggttgaactagattctatttctataactttagcagtgtgtagagaattaggattacctcttgaaacttctga |
15141807 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 61514 - 61441
Alignment:
| Q |
145 |
gaggtggaactagattctatatcaatcacattggcagagtgaagagaattagtattacctcttgaagcttctga |
218 |
Q |
| |
|
||||| |||||||||||||||| || | ||| | ||||||| |||||| || ||||||| ||||||||||||| |
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|
| T |
61514 |
gaggtagaactagattctatatttataatattagtagagtgaggagaatcaggattaccttttgaagcttctga |
61441 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 36136407 - 36136495
Alignment:
| Q |
145 |
gaggtggaactagattctatatcaatcacattggcagagtgaagagaattagtattacctcttgaagcttctgagttgacagcttctga |
233 |
Q |
| |
|
||||| |||||||||||||||| ||| |||| ||||||| |||||| | |||| |||||||||||||| || || |||||||||| |
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| T |
36136407 |
gaggtagaactagattctatattaataacatcaacagagtgtggagaatcatgattatctcttgaagcttctaagatgccagcttctga |
36136495 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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