View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7040_high_1 (Length: 449)
Name: NF7040_high_1
Description: NF7040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7040_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 367
Target Start/End: Original strand, 6476280 - 6476623
Alignment:
| Q |
19 |
gaagtgattaattatagggagaagattctggaatttt-cgagaatcggtggagattgttcgaatttgaagaaactcgccggcgcgggaaagtcgccggag |
117 |
Q |
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| T |
6476280 |
gaagtgattgattatagggagaagattctggaatttttcgagaattggtggagattgttcgaatttgaagaaactcgccgacgcgggaaagtcgccggag |
6476379 |
T |
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| Q |
118 |
gagatttctgatatctctgagtcttgcgctcagatgatttttcagttgcataatcatgttgaggtaactttgaaatgaaatttaccgcgnnnnnnnacta |
217 |
Q |
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| T |
6476380 |
gagatttctgatatctctgagtcttgcgctcagatgatttttcagttgcataatcatgttgaggtaactttgaaatgaaatttaccgcgtttttttacta |
6476479 |
T |
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| Q |
218 |
gttaccgcgaataataattaatctcggttaaatatgaaacgctttatctttatcgtattcgtaactgaagaattactgttaaccttcttctcaacgtaag |
317 |
Q |
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| T |
6476480 |
gttaccgcgaataataattaatcacggttaaatatgaaacg------ctttatcgtattcgtaactgaagaattactgttaaccttcttctcaacgtaag |
6476573 |
T |
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| Q |
318 |
cagaaagaaaacgactgatcttttccttgctaaatcgttcgttttatcag |
367 |
Q |
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| T |
6476574 |
cagaaagaaaacgactgatcttttccttgctaaatcgttcgttttatcag |
6476623 |
T |
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