View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7040_high_2 (Length: 250)
Name: NF7040_high_2
Description: NF7040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7040_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 28 - 244
Target Start/End: Complemental strand, 46195626 - 46195408
Alignment:
| Q |
28 |
tatttttaattgctgtattggatttgctaaaaccgacatctatgtttttggatttgctactaaaaccaacatc-tatgtttataaactatttaagtgcta |
126 |
Q |
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| T |
46195626 |
tatttttaattgctgtattggatttgctaaaaccgacatctatgtttttggatttgctactaaaaccaacatcttatgtttataaactatttaattgcta |
46195527 |
T |
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| Q |
127 |
aaaacactaagaaaaatatttttaattgctgtnnnnnnnntag-tttagtccttaaaagatttaagtttttatccttgtgttggttttagtcttaaaaca |
225 |
Q |
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| T |
46195526 |
caaacactaagaaaaatatttttaattgctgtaaaaaaaatagttttagtccttaaaagatttaagtttttatccttgtgttggttttagtcttaaaaca |
46195427 |
T |
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| Q |
226 |
cggaccgtctaactccaaa |
244 |
Q |
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||||||||||||||||||| |
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| T |
46195426 |
cggaccgtctaactccaaa |
46195408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 46195936 - 46195908
Alignment:
| Q |
1 |
ctcttcaagttacaatccaaaaacaaata |
29 |
Q |
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| T |
46195936 |
ctcttcaagttacaatccaaaaacaaata |
46195908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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