View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7040_low_1 (Length: 534)
Name: NF7040_low_1
Description: NF7040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7040_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 495; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Original strand, 5774976 - 5775490
Alignment:
| Q |
1 |
ctatccctaagcatctccatcaccgtcttccggatcctatacagcttcgatatttcatcctccgaaaacacatgaaaaacttccaaatgaaatttggagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5774976 |
ctatccctaagcatctccatcaccgtcttccggatcctatacagcttcgatatttcatcctccgaaaacacatgaaaaacttccaaatgaaatttggagg |
5775075 |
T |
|
| Q |
101 |
cgatttcagagaagtcccgtgccgctttagtaaggctggtctggcaaacgacgatggctctgtagacattgtcggaggacatacgattggtgtaagtcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5775076 |
cgatttcagagaagtcccgtgccgctttagtaaggctggtctggcaaacgacgatggctctgtagacattgtcggaggacatacgattggtgtaagtcct |
5775175 |
T |
|
| Q |
201 |
taaggtgtggacgtcaaccttatcattctcaggaaagaacacataaatctggtcagagggattgtcttttttggctttcttgatgacaaggtcttctctc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5775176 |
taaggtgtggacgtcaaccttatcattctcaggaaagaacacataaatctggtcagagggattgtcttttttggctttcttgatgacaaggtcttctctc |
5775275 |
T |
|
| Q |
301 |
ttcaaattctcacaatatgtctccttgaactcttgttttgacatacaaacctcgaaatctcctacgaggtaattcctgtcacgaagcatctccatcacct |
400 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5775276 |
ttcaagttctcaccatatgtctccttgaactcttgttttgacatacaaacctcgaaatctcctacgaggtaattcctgtcgcgaagcatctccatcacct |
5775375 |
T |
|
| Q |
401 |
tcttccggatcctatacagctttgatatttcatcctccgaaaacaccatcgtggagtcgctcttccaagtccctctaataaaaaacagtacccaagtata |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5775376 |
tcttccggatcctatacagctttgatatttcatcctccgaaaacaccattgtggagtcgctcttccaagtccctctaatagaaaacagtacccaagtata |
5775475 |
T |
|
| Q |
501 |
aatagaggcaaaaca |
515 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5775476 |
aatagaggcaaaaca |
5775490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 73 - 513
Target Start/End: Original strand, 5768399 - 5768835
Alignment:
| Q |
73 |
tgaaaaacttccaaatgaaatttggaggcgatttcagagaagtcccgtgccgctttagtaaggctggtctggcaaacgacgatggctctgtagacattgt |
172 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
5768399 |
tgaaaaacttccaaatgaaatttggagtcgatttcagaga------gtgccatgttagtaaggctggtctggcaaacgatgatggctctgtagacattct |
5768492 |
T |
|
| Q |
173 |
cggaggacatacgattggtgtaagtccttaaggtgtggacgtcaaccttatcattctcaggaaagaacacataaatctggtcagagggattgtctttttt |
272 |
Q |
| |
|
||||| |||||| |||||| ||||||| |||||||||||| ||||||| |||| ||| || ||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
5768493 |
cggagttcatacgtttggtgcaagtcctgaaggtgtggacgccaaccttctcatcctccgggaagaagacataaatctggtcagagggattgtccttttt |
5768592 |
T |
|
| Q |
273 |
ggctttcttgatgacaaggtcttctctcttcaaattctcacaatatgtctccttgaactcttgttttgacatacaaacctcgaaatctcctacgaggtaa |
372 |
Q |
| |
|
|| || |||||||||||||||||||| |||| | ||| | |||| ||||||||||||||| ||| ||||| |||||| |||||||||||||||||| |
|
|
| T |
5768593 |
cgccttgttgatgacaaggtcttctctattcatgtgctccccatatttctccttgaactcttctttcgacatgttaacctcaaaatctcctacgaggtaa |
5768692 |
T |
|
| Q |
373 |
ttcctgtcacgaagcatctccatcaccttcttccggatcctatacagctttgatatttcatcctccgaaaacaccatcgtggagtcgctcttccaagtcc |
472 |
Q |
| |
|
||||| || | |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
5768693 |
ttcctatctctaagcatctccatcaccgtcttccggatcctatacagcttagatatttcatcctccgaaaacaccattgtggagtcgctcttctaagtcc |
5768792 |
T |
|
| Q |
473 |
ctctaata--aaaaacagtacccaagtataaatagaggcaaaa |
513 |
Q |
| |
|
|||||||| |||||||| || |||||||||| |||||||||| |
|
|
| T |
5768793 |
ctctaataggaaaaacagaactcaagtataaacagaggcaaaa |
5768835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 73 - 446
Target Start/End: Original strand, 5774670 - 5775046
Alignment:
| Q |
73 |
tgaaaaacttccaaatgaaatttggaggcgatttcagagaa---gtcccgtgccgctttagtaaggctggtctggcaaacgacgatggctctgtagacat |
169 |
Q |
| |
|
||||||||||||||||||||||||||| ||| | ||||| || || |||| ||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
5774670 |
tgaaaaacttccaaatgaaatttggagtcgaactgagagatactgttccatgccatgttagtaaggctggtctggcaaacgatgatggccctgtagacat |
5774769 |
T |
|
| Q |
170 |
tgtcggaggacatacgattggtgtaagtccttaaggtgtggacgtcaaccttatcattctcaggaaagaacacataaatctggtcagagggattgtcttt |
269 |
Q |
| |
|
| || ||| ||| || |||||||||||||| |||||||||||| ||||||| |||| ||| || ||||| |||||||||||||||||||||||||| || |
|
|
| T |
5774770 |
tctccgagttcatgcgtttggtgtaagtcctgaaggtgtggacgccaaccttctcatcctccgggaagaagacataaatctggtcagagggattgtcctt |
5774869 |
T |
|
| Q |
270 |
tttggctttcttgatgacaaggtcttctctcttcaaattctcacaatatgtctccttgaactcttgttttgacatacaaacctcgaaatctcctacgagg |
369 |
Q |
| |
|
||| || || |||||||||||||||||||| |||| | ||| | |||| ||||||||||||||| ||| ||||| |||||| ||||||||||||||| |
|
|
| T |
5774870 |
tttcgccttgttgatgacaaggtcttctctattcatgtgctccccatatttctccttgaactcttctttcgacatgttaacctcaaaatctcctacgagg |
5774969 |
T |
|
| Q |
370 |
taattcctgtcacgaagcatctccatcaccttcttccggatcctatacagctttgatatttcatcctccgaaaacac |
446 |
Q |
| |
|
|||||||| || | |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5774970 |
taattcctatccctaagcatctccatcaccgtcttccggatcctatacagcttcgatatttcatcctccgaaaacac |
5775046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 5768696 - 5768766
Alignment:
| Q |
1 |
ctatccctaagcatctccatcaccgtcttccggatcctatacagcttcgatatttcatcctccgaaaacac |
71 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5768696 |
ctatctctaagcatctccatcaccgtcttccggatcctatacagcttagatatttcatcctccgaaaacac |
5768766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University