View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7040_low_3 (Length: 407)

Name: NF7040_low_3
Description: NF7040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7040_low_3
NF7040_low_3
[»] chr8 (5 HSPs)
chr8 (27-396)||(6837313-6837680)
chr8 (232-302)||(43657408-43657478)
chr8 (250-302)||(38641307-38641359)
chr8 (56-105)||(7380524-7380573)
chr8 (232-285)||(44316535-44316587)
[»] scaffold0012 (2 HSPs)
scaffold0012 (232-290)||(202079-202136)
scaffold0012 (270-302)||(202022-202054)
[»] chr4 (5 HSPs)
chr4 (232-300)||(8989575-8989642)
chr4 (53-164)||(2432017-2432125)
chr4 (53-124)||(53218928-53218999)
chr4 (232-298)||(6806214-6806279)
chr4 (51-79)||(37148890-37148918)
[»] chr2 (2 HSPs)
chr2 (235-293)||(14631846-14631904)
chr2 (51-111)||(28549233-28549293)
[»] chr7 (1 HSPs)
chr7 (232-300)||(32354868-32354935)
[»] chr1 (4 HSPs)
chr1 (54-169)||(9779131-9779241)
chr1 (232-300)||(47325511-47325578)
chr1 (232-302)||(24172656-24172724)
chr1 (51-105)||(47683056-47683110)
[»] chr6 (1 HSPs)
chr6 (232-285)||(34096484-34096536)
[»] chr3 (1 HSPs)
chr3 (232-289)||(32895679-32895736)


Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 27 - 396
Target Start/End: Original strand, 6837313 - 6837680
Alignment:
Q  27 aaaatcactcaaa--tccatctcatatgcacatttgattatgtaaaattcatgatggaaactcttcttatggtataaattttcaatttataggggcaatc 124  Q
    |||||||||||||  | ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6837313 aaaatcactcaaaatttcatctcaaatacacatttgattatgtaaaattcatgatggaaactcttcttatggtataaattttcaatttataggagcaatc 6837412  T
Q  125 catccattatttaaa--gaggggcaataattaaaatatcaaatacttcaacacatatgacataaacacaatttttagtcttaataaatannnnnnnnnnn 222  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
T  6837413 catccattatttaaatagaggggcaataattaaaatatcaaatacttcaacacatatgacataaacacaatttttagtcttaataaatgatgatgatgat 6837512  T
Q  223 nnnnnnaacaacttttgaaataacttcaaatatacaacaatctcctccatatttcaaaagttttaaattaagaaaatatagtgtaatgcctgggaaagat 322  Q
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6837513 g------ataacttttgaaataacttcaaatatacaacaatctcctccatatttcaaaagttttaaattaagaaaatatagtgtaatgcctgggaaagat 6837606  T
Q  323 gtgtgtcgaaatcgtggaagaaccctagatcaactacaagtttttcatgtagtcaatattgtgcttgatgtcca 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6837607 gtgtgtcgaaatcgtggaagaaccctagatcaactacaagtttttcatgtagtcaatattgtgcttgatgtcca 6837680  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 302
Target Start/End: Complemental strand, 43657478 - 43657408
Alignment:
Q  232 aacttttgaaataacttcaaatatacaacaatctcctccatatttcaaaagttttaaattaagaaaatata 302  Q
    ||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||  ||||||||||    
T  43657478 aacttttgaaataacttcaaatatacaacaatcccccacatatttcaaaagttttaaatctagaaaatata 43657408  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 38641307 - 38641359
Alignment:
Q  250 aaatatacaacaatctcctccatatttcaaaagttttaaattaagaaaatata 302  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  38641307 aaatatacaacaatcccctgcatatttcaaaagttttaaattaagaaaatata 38641359  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 7380573 - 7380524
Alignment:
Q  56 atttgattatgtaaaattcatgatggaaactcttcttatggtataaattt 105  Q
    |||||||| | |||||||||||   |||||||||||||||||||||||||    
T  7380573 atttgattctataaaattcatgggagaaactcttcttatggtataaattt 7380524  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 44316587 - 44316535
Alignment:
Q  232 aacttttgaaataacttcaaatatacaacaatctcctccatatttcaaaagttt 285  Q
    ||||||||||||| || |||||||||||||||| ||  ||||||||||||||||    
T  44316587 aacttttgaaatatct-caaatatacaacaatcccccacatatttcaaaagttt 44316535  T

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Target: scaffold0012 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 290
Target Start/End: Complemental strand, 202136 - 202079
Alignment:
Q  232 aacttttgaaataacttcaaatatacaacaatctcctccatatttcaaaagttttaaat 290  Q
    ||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||    
T  202136 aacttttgaaataacttcaaatatacaacaatc-cccacatatttcaaaagttttaaat 202079  T

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Target: scaffold0012; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 202054 - 202022
Alignment:
Q  270 catatttcaaaagttttaaattaagaaaatata 302  Q
    |||||||||||||||||||||||| ||||||||    
T  202054 catatttcaaaagttttaaattaaaaaaatata 202022  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 8989575 - 8989642
Alignment:
Q  232 aacttttgaaataacttcaaatatacaacaatctcctccatatttcaaaagttttaaattaagaaaata 300  Q
    ||||||||||||| ||  ||||||||||||||| ||  |||||||||||||||||||||||||||||||    
T  8989575 aacttttgaaatatcta-aaatatacaacaatcccccacatatttcaaaagttttaaattaagaaaata 8989642  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 164
Target Start/End: Complemental strand, 2432125 - 2432017
Alignment:
Q  53 cacatttgattatgtaaaattcatgatggaaactcttcttatggtataaattttcaatttataggggcaatccatccattatttaaagagggg-caataa 151  Q
    ||||||||||| ||||||||| ||||  |||||||||||||| |||||||||| || ||||| ||| ||    ||| ||||||| | |||||| ||||||    
T  2432125 cacatttgattctgtaaaatttatgagagaaactcttcttattgtataaatttccagtttatggggaca----atctattattttaggaggggacaataa 2432030  T
Q  152 ttaaaatatcaaa 164  Q
    |||||||||||||    
T  2432029 ttaaaatatcaaa 2432017  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 53218928 - 53218999
Alignment:
Q  53 cacatttgattatgtaaaattcatgatggaaactcttcttatggtataaattttcaatttataggggcaatc 124  Q
    ||||||||||| | ||||||||||||  ||||||||| |||| |||||||||| || || || |||||||||    
T  53218928 cacatttgattttataaaattcatgaaagaaactctttttatagtataaatttccatttaatgggggcaatc 53218999  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 298
Target Start/End: Complemental strand, 6806279 - 6806214
Alignment:
Q  232 aacttttgaaataacttcaaatatacaacaatctcctccatatttcaaaagttttaaattaagaaaa 298  Q
    ||||||||||||| ||  ||||||||||||||| ||   ||||||||||||||||||||||| ||||    
T  6806279 aacttttgaaatatcta-aaatatacaacaatcccccatatatttcaaaagttttaaattaaaaaaa 6806214  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 79
Target Start/End: Complemental strand, 37148918 - 37148890
Alignment:
Q  51 tgcacatttgattatgtaaaattcatgat 79  Q
    |||||||||||||||||||||||||||||    
T  37148918 tgcacatttgattatgtaaaattcatgat 37148890  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 293
Target Start/End: Original strand, 14631846 - 14631904
Alignment:
Q  235 ttttgaaataacttcaaatatacaacaatctcctccatatttcaaaagttttaaattaa 293  Q
    ||||||||||| |||||||||||||| ||| ||  ||||||||||||||||||||||||    
T  14631846 ttttgaaataaattcaaatatacaacgatcacccacatatttcaaaagttttaaattaa 14631904  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 28549233 - 28549293
Alignment:
Q  51 tgcacatttgattatgtaaaattcatgatggaaactcttcttatggtataaattttcaatt 111  Q
    |||| |||||||| ||||||||| ||||  ||||||||||||||| ||||||||| |||||    
T  28549233 tgcatatttgattttgtaaaatttatgagagaaactcttcttatgatataaatttccaatt 28549293  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 32354935 - 32354868
Alignment:
Q  232 aacttttgaaataacttcaaatatacaacaatctcctccatatttcaaaagttttaaattaagaaaata 300  Q
    ||||||||||||| ||  ||||||| ||||||| ||  |||||||||||||||||||||||||||||||    
T  32354935 aacttttgaaatatcta-aaatatataacaatcgcccacatatttcaaaagttttaaattaagaaaata 32354868  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 169
Target Start/End: Complemental strand, 9779241 - 9779131
Alignment:
Q  54 acatttgattatgtaaaattcatgatggaaactcttcttatggtataaattttcaatttataggggcaatccatccattatttaaagaggggcaataatt 153  Q
    |||||| ||| |||||||||||||   ||||||||||||| | ||||| ||||||||||||  |||||    ||| ||||||| ||||  || |||||||    
T  9779241 acatttaattctgtaaaattcatgtgagaaactcttcttacgatataatttttcaatttatgagggca----atctattattttaaga-aggaaataatt 9779147  T
Q  154 aaaatatcaaatactt 169  Q
    ||||||||||||||||    
T  9779146 aaaatatcaaatactt 9779131  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 47325578 - 47325511
Alignment:
Q  232 aacttttgaaataacttcaaatatacaacaatctcctccatatttcaaaagttttaaattaagaaaata 300  Q
    ||||||||||||| ||  ||||||||||||||  ||  ||||||| |||||||||||||||||||||||    
T  47325578 aacttttgaaatatcta-aaatatacaacaattccccacatattttaaaagttttaaattaagaaaata 47325511  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 302
Target Start/End: Complemental strand, 24172724 - 24172656
Alignment:
Q  232 aacttttgaaataacttcaaatatacaacaatctcctccatatttcaaaagttttaaattaagaaaatata 302  Q
    ||||||||||||| ||  |||||||||||||||  |  |||||||||||||||||||||||| ||||||||    
T  24172724 aacttttgaaatatcta-aaatatacaacaatcctccacatatttcaaaagttttaaattaa-aaaatata 24172656  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 47683110 - 47683056
Alignment:
Q  51 tgcacatttgattatgtaaaattcatgatggaaactcttcttatggtataaattt 105  Q
    |||||||||||||||||||||| | |||   |||||||| |||||||||||||||    
T  47683110 tgcacatttgattatgtaaaatccctgagaaaaactctttttatggtataaattt 47683056  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 285
Target Start/End: Original strand, 34096484 - 34096536
Alignment:
Q  232 aacttttgaaataacttcaaatatacaacaatctcctccatatttcaaaagttt 285  Q
    ||||||||||||| || |||||||||||||||| ||  ||||||||||||||||    
T  34096484 aacttttgaaatatct-caaatatacaacaatcccccacatatttcaaaagttt 34096536  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 32895736 - 32895679
Alignment:
Q  232 aacttttgaaataacttcaaatatacaacaatctcctccatatttcaaaagttttaaa 289  Q
    ||||||||||||||   |||||||||||||||| ||  ||| ||||||||||||||||    
T  32895736 aacttttgaaataatcccaaatatacaacaatcccccacatttttcaaaagttttaaa 32895679  T

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