View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7040_low_6 (Length: 201)

Name: NF7040_low_6
Description: NF7040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7040_low_6
NF7040_low_6
[»] chr3 (4 HSPs)
chr3 (12-192)||(42369822-42370003)
chr3 (23-152)||(5555603-5555733)
chr3 (12-130)||(23295104-23295223)
chr3 (12-95)||(13613992-13614077)
[»] chr2 (1 HSPs)
chr2 (23-169)||(24372725-24372873)
[»] chr4 (3 HSPs)
chr4 (12-118)||(10491406-10491515)
chr4 (47-158)||(14089434-14089543)
chr4 (124-169)||(10491342-10491386)
[»] chr5 (1 HSPs)
chr5 (12-192)||(18957555-18957735)
[»] scaffold1121 (1 HSPs)
scaffold1121 (12-170)||(363-516)
[»] chr8 (3 HSPs)
chr8 (50-154)||(22739947-22740050)
chr8 (50-148)||(30422416-30422513)
chr8 (12-61)||(14993369-14993419)
[»] chr7 (5 HSPs)
chr7 (41-137)||(29698563-29698663)
chr7 (82-154)||(6485432-6485503)
chr7 (50-155)||(21592552-21592655)
chr7 (23-92)||(11519171-11519242)
chr7 (23-115)||(14267158-14267254)
[»] chr6 (1 HSPs)
chr6 (23-105)||(23576344-23576430)
[»] chr1 (1 HSPs)
chr1 (50-106)||(29984952-29985008)


Alignment Details
Target: chr3 (Bit Score: 134; Significance: 6e-70; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 42369822 - 42370003
Alignment:
Q  12 gacatcaatggatcacatgacacagtgag-catggtttgctaggtgctttaacaagtttctatgctaaagttaatcaacataaaaacatcatcaaataaa 110  Q
    |||||||| ||||||||||||||| | || |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  42369822 gacatcaagggatcacatgacacaatcaggcatggtttgctaggtgctttaacaagtttctaagctaaagctaatcaacataaaaacatcatcaaataaa 42369921  T
Q  111 cctagctatatatacatcatcaaaacacgaacctataactaaaagcaatatcatattcaatctcctccttttcgatgatgtc 192  Q
    ||||||||| || ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  42369922 cctagctatttagacatcatcaaaacacaaacctataactaaaagcaatatcatcttcaatctcctcctttttgatgatgtc 42370003  T

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Target: chr3; HSP #2
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 5555603 - 5555733
Alignment:
Q  23 atcacatgacacagtgag-catggtttgctaggtgctttaacaagtttctatgctaaagttaatcaacataaaaacatcatcaaataaacctagctatat 121  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| |||||||||||||||||||||| |    
T  5555603 atcacatgacacaatgagacatggtttgctaggtgctttaacaagtttctaagataaagctaatcaacataaaaatatcatcaaataaacctagctattt 5555702  T
Q  122 atacatcatcaaaacacgaacctataactaa 152  Q
    | |||| |||||||||| |||||||||||||    
T  5555703 agacataatcaaaacacaaacctataactaa 5555733  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 23295223 - 23295104
Alignment:
Q  12 gacatcaatggatcacatgacacagtgag-catggtttgctaggtgctttaacaagtttctatgctaaagttaatcaacataa-aaacatcatcaaataa 109  Q
    |||||||| |||||||| ||  || |||| |||| ||||||||||||||||||||||||||| |||| |  ||||||||||||  |||| |||||||| |    
T  23295223 gacatcaagggatcacaagaggcaatgagacatgatttgctaggtgctttaacaagtttctaagctacaactaatcaacataatgaacaacatcaaat-a 23295125  T
Q  110 acctagctatatatacatcat 130  Q
    |||||||||| || |||||||    
T  23295124 acctagctatctagacatcat 23295104  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 13613992 - 13614077
Alignment:
Q  12 gacatcaatggatcacatgacacagtgag-catggtttgctagg-tgctttaacaagtttctatgctaaagttaatcaacataaaa 95  Q
    |||||||| | ||||||||||||  |||| |||| ||||||||| |||||||||||||||||| ||||||| ||||||||| ||||    
T  13613992 gacatcaaagaatcacatgacactatgagacatgatttgctagggtgctttaacaagtttctaagctaaagctaatcaacacaaaa 13614077  T

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Target: chr2 (Bit Score: 75; Significance: 9e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 23 - 169
Target Start/End: Complemental strand, 24372873 - 24372725
Alignment:
Q  23 atcacatgacacagtgag-catggtttgctaggtgctttaacaagtttctatgctaaagttaatcaacataaaa--acatcatcaaataaacctagctat 119  Q
    ||||||||||||| |||| ||||||||||||| ||| |||||||||||||| ||||||| ||| ||||||||||  || |||||||||||||||||||||    
T  24372873 atcacatgacacaatgagacatggtttgctagatgccttaacaagtttctaagctaaagctaaccaacataaaagaacctcatcaaataaacctagctat 24372774  T
Q  120 atatacatcatcaaaacacgaacctataactaaaagcaatatcatattca 169  Q
     || ||||||||||||||| ||||||| ||| ||||||||||||| ||||    
T  24372773 ttagacatcatcaaaacacaaacctatgact-aaagcaatatcatcttca 24372725  T

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Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 10491515 - 10491406
Alignment:
Q  12 gacatcaatggatcacatgacacagtgag-catggtttgctaggtgctttaacaagtttctatgctaaagttaatcaacataaa--aacatcatcaaata 108  Q
    |||||||| | |||| |||||||| |||| ||||||| |||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||||||    
T  10491515 gacatcaaggaatcaaatgacacaatgagacatggttagctaggtgctttaacaagtttctaagctaaagctaatcaacataaactaacatcatcaaata 10491416  T
Q  109 aacctagcta 118  Q
    ||||||||||    
T  10491415 aacctagcta 10491406  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 47 - 158
Target Start/End: Complemental strand, 14089543 - 14089434
Alignment:
Q  47 ttgctaggtgctttaacaagtttctatgctaaagttaatcaacataaaaacatcatcaaataaacctagctatatatacatcatcaaaacacgaacctat 146  Q
    |||||||||||||||||| ||||||| |||| |  ||| |||  |||||||||||||||||||||||||||| ||  ||||||||||||||| ||  | |    
T  14089543 ttgctaggtgctttaacatgtttctaagctataactaa-caatgtaaaaacatcatcaaataaacctagcta-atgaacatcatcaaaacacaaatttgt 14089446  T
Q  147 aactaaaagcaa 158  Q
    ||||||||||||    
T  14089445 aactaaaagcaa 14089434  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 10491386 - 10491342
Alignment:
Q  124 acatcatcaaaacacgaacctataactaaaagcaatatcatattca 169  Q
    ||||||||||||||| ||||||||||| ||||||||||||| ||||    
T  10491386 acatcatcaaaacacaaacctataact-aaagcaatatcatcttca 10491342  T

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Target: chr5 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 18957735 - 18957555
Alignment:
Q  12 gacatcaatggatcacatgacacagtgag-catggtttgctaggtgctttaacaagtttctatgctaaagttaatcaacataa-aaacatcatcaaataa 109  Q
    |||||||| ||||||||||| ||| |||| |||||||||||||||| |||||||||||||||  ||| |  ||||||| |||| ||||| ||||||||||    
T  18957735 gacatcaagggatcacatga-acaatgagacatggtttgctaggtgttttaacaagtttctaacctagaactaatcaatataataaacaacatcaaataa 18957637  T
Q  110 acctagctatatatacatcatcaaaacacgaacctataactaaaagcaatatcatattcaatctcctccttttcgatgatgtc 192  Q
     ||||||||| || ||||||||||||||  ||| | |||||||||||||||| |  ||||||| || | |||| |||||||||    
T  18957636 -cctagctatttagacatcatcaaaacataaacatgtaactaaaagcaatattaacttcaatcaccccttttttgatgatgtc 18957555  T

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Target: scaffold1121 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold1121
Description:

Target: scaffold1121; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 12 - 170
Target Start/End: Complemental strand, 516 - 363
Alignment:
Q  12 gacatcaatggatcacatgacacagtgag-catggtttgctaggtgctttaacaagtttctatgctaaagttaatcaacataaaa--acatcatcaaata 108  Q
    |||||||| | ||||||||||||| |||  |||||||||||||| |||||||||||||||       ||| | ||||||||||||  |||||||||||||    
T  516 gacatcaaggaatcacatgacacaatgatacatggtttgctaggggctttaacaagtttc-------aagctgatcaacataaaagaacatcatcaaata 424  T
Q  109 aacctagctatatatacatcatcaaaacacgaacctataactaaaagcaatatcatattcaa 170  Q
    |||||||  || || ||||||||||||||| ||||||||||| ||||||||||||| |||||    
T  423 aacctagtcatttagacatcatcaaaacacaaacctataact-aaagcaatatcatcttcaa 363  T

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Target: chr8 (Bit Score: 57; Significance: 5e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 22740050 - 22739947
Alignment:
Q  50 ctaggtgctttaacaagtttctatgctaaagttaatcaacataaaaacatcatcaaataaacctagctatatatacatcatcaaaacacgaacctataac 149  Q
    |||||| |||||| | ||||||| ||||||  ||||||||||||||| ||||||||||||||||||||| ||  ||||||||||||||| ||||||||||    
T  22740050 ctaggtcctttaaaatgtttctaagctaaaactaatcaacataaaaatatcatcaaataaacctagcta-atgaacatcatcaaaacacaaacctataac 22739952  T
Q  150 taaaa 154  Q
    |||||    
T  22739951 taaaa 22739947  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 30422513 - 30422416
Alignment:
Q  50 ctaggtgctttaacaagtttctatgctaaagttaatcaacataaaaacatcatcaaataaacctagctatatatacatcatcaaaacacgaacctataa 148  Q
    |||||||||||||||||||||||  ||  |  |||||||||||||| ||| |||||||||||||||||| ||  ||||||||||||||| ||| |||||    
T  30422513 ctaggtgctttaacaagtttctaaacttgaactaatcaacataaaatcattatcaaataaacctagcta-atggacatcatcaaaacacaaacatataa 30422416  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 14993369 - 14993419
Alignment:
Q  12 gacatcaatggatcacatgacacagtgag-catggtttgctaggtgcttta 61  Q
    |||||||| | ||||||||||||| |||| |||||||||||||||||||||    
T  14993369 gacatcaaggaatcacatgacacaatgagacatggtttgctaggtgcttta 14993419  T

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Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 41 - 137
Target Start/End: Complemental strand, 29698663 - 29698563
Alignment:
Q  41 catggtttgctagg-tgctttaacaagtttctatgctaaagttaatcaacataaa--aacatcatcaaataaacctagctat-atatacatcatcaaaac 136  Q
    |||||||||||||| |||||||||||||||||| ||||||| |||||||||||||  ||||| |||||||||||||| ||||  || |||||||||||||    
T  29698663 catggtttgctagggtgctttaacaagtttctaagctaaagctaatcaacataaaataacattatcaaataaacctaactatcttagacatcatcaaaac 29698564  T
Q  137 a 137  Q
    |    
T  29698563 a 29698563  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 6485503 - 6485432
Alignment:
Q  82 taatcaacataaaaacatcatcaaataaacctagctatatatacatcatcaaaacacgaacctataactaaaa 154  Q
    ||||||||||||| ||||||||||||||||||||||| ||  | ||||||||||||| |||||||||||||||    
T  6485503 taatcaacataaacacatcatcaaataaacctagcta-atgaaaatcatcaaaacacaaacctataactaaaa 6485432  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 155
Target Start/End: Original strand, 21592552 - 21592655
Alignment:
Q  50 ctaggtgctttaacaagtttctatgctaaagttaatcaacataaaaacatcatcaaataaacctagctatatatacatcatcaaaacacgaacctataac 149  Q
    ||||||||||||| | ||||||| |||| |  ||| ||| ||| |||||||||||||||||||||  || ||  ||||||||||||||| ||||||||||    
T  21592552 ctaggtgctttaagatgtttctaagctataactaa-caatatataaacatcatcaaataaacctatata-atgaacatcatcaaaacacaaacctataac 21592649  T
Q  150 taaaag 155  Q
    ||||||    
T  21592650 taaaag 21592655  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 11519171 - 11519242
Alignment:
Q  23 atcacatgacacagtgag-catggtttgctagg-tgctttaacaagtttctatgctaaagttaatcaacata 92  Q
    ||||||||||||| |||| |||| ||||||||| || ||||||||||||||| ||||||| |||||||||||    
T  11519171 atcacatgacacaatgagacatgatttgctagggtgttttaacaagtttctaagctaaagctaatcaacata 11519242  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 14267254 - 14267158
Alignment:
Q  23 atcacatgacacagtgag-catggtttgctagg-tgctttaacaagtttctatgctaaagttaatcaacataaaa--acatcatcaaataaacctag 115  Q
    ||||||||||||  |||| |||||||||||||  | |||||||||||||  | ||||||| ||||||||| ||||  ||||||||||||||||||||    
T  14267254 atcacatgacactatgagacatggtttgctagactactttaacaagttttaaagctaaagctaatcaacaaaaaagaacatcatcaaataaacctag 14267158  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 23576344 - 23576430
Alignment:
Q  23 atcacatgacacagtgag-catggtttgctagg-tgctttaacaagtttctatgctaaagttaatcaacataaa--aacatcatcaa 105  Q
    |||||| |||||| |||| ||| |||||||||| |||||||||||||||||| ||||||| |||||||||||||  |||||||||||    
T  23576344 atcacaagacacaatgagacatagtttgctagggtgctttaacaagtttctaagctaaagctaatcaacataaaagaacatcatcaa 23576430  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 29984952 - 29985008
Alignment:
Q  50 ctaggtgctttaacaagtttctatgctaaagttaatcaacataaaaacatcatcaaa 106  Q
    ||||||||||||||||||||||| | ||    ||||||||||||||| |||||||||    
T  29984952 ctaggtgctttaacaagtttctaagttaggactaatcaacataaaaatatcatcaaa 29985008  T

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