View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7041_low_1 (Length: 570)
Name: NF7041_low_1
Description: NF7041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7041_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 1 - 563
Target Start/End: Complemental strand, 39809345 - 39808783
Alignment:
| Q |
1 |
caagatgccaaatacgccaacacatgttctcaagtcttgagctacgttcccttgtattacgagtggcaacaaccttaagccatgtacgatgaagatcaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39809345 |
caagatgccaaatacgccaacacatgttctcaagtcttgagctacgttcccttgtattacgagtggcaacaaccttaagccatgtacgatgaagatcaga |
39809246 |
T |
|
| Q |
101 |
ctcatcaacagcactcactacttcttcaacaaagtactttgttggattgaaatgatcaccactttctctcgctgcagccgccaccctttgctgctcttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39809245 |
ctcatcaacagcactcactacttcttcaacaaagtactttgttggattgaaatgatcaccactttctctcgctgcagccgccaccctttgctgctcttca |
39809146 |
T |
|
| Q |
201 |
acggtggtagaagcgccaccaccggtggatagtatagcctcaaggtagccattaatccactcattaccagccattaatctcaacctttctttgtattata |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39809145 |
acggtggtagaagcaccaccaccggtggatagtatagcctcaaggtagccattaatccactcattaccagccattaatctcaacctttctttgtattata |
39809046 |
T |
|
| Q |
301 |
tatgtaatgtaaaactactatacagtttacaatattcttaaactcaagtactcattctaatatgaagtatgtttcttgaatgttacatgatcaacatggc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39809045 |
tatgtaatgtaaaactactatacagtttacaatattcttaaactcaagtactcattctaatatgaagtatgtttcttgaatgttacatgatcaacatggc |
39808946 |
T |
|
| Q |
401 |
ttatctttatgtaatgttttgtgtgcagtgttagagaaccacatgcaatgaacgatgtatattgctcatttttggttcaaatttgtgtgttgtgtattgt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39808945 |
ttatctttatgtaatgttttgtgtgcagtgttagagaaccacatgcaatgaacgatgtatattgctcatttttggttcaaatttgtgtgttgtgtattgt |
39808846 |
T |
|
| Q |
501 |
attgtcttttgtgttagttagttaggcaccgaatataattaacattattccttattcttctca |
563 |
Q |
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| T |
39808845 |
gttgtcttttgtgttagttagttaggcaccgaatataattaacattattccttattcttctca |
39808783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 15794965 - 15794812
Alignment:
| Q |
1 |
caagatgccaaatacgccaacacatgttctcaagtcttgagctacgttcccttgtattacgagtggcaacaaccttaagccatgtacgatgaagatcaga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||| | ||||| || | ||||||||| || || || ||||| ||||||| ||| || |||| | |||||| |
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| T |
15794965 |
caagatgccaaatacgccaacacatgttctccaaccttgaacttctttcccttgtgttgcgtgttgcaaccaccttaacccaagtgcgatataaatcaga |
15794866 |
T |
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| Q |
101 |
ctcatcaacagcactcactacttcttcaacaaagtactttgttggattgaaatg |
154 |
Q |
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||||||||| ||| || ||||| ||||| |||||||||||||||||||| |
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| T |
15794865 |
ttcatcaacacttgccacaacctcttccacaaaatactttgttggattgaaatg |
15794812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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