View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7041_low_2 (Length: 500)
Name: NF7041_low_2
Description: NF7041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7041_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 18 - 496
Target Start/End: Original strand, 37792649 - 37793127
Alignment:
| Q |
18 |
aatagcaaaagattcaaattcaaataatcaccctacattggaagaacctaagaaatttgaaggagttttagagaacaacaatgatcctaatattgcaaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
37792649 |
aatagcaaaagattcaaattcaaataatcaccctacattggaagaacctaagaaatttgaagtagttttagagagcaacaatgatcctaatattgcaaat |
37792748 |
T |
|
| Q |
118 |
caaatatctccacaaccatcttcaagcgaattgtcttgcataacaatggacaatgcaattcttgatgataatgacctttcttttatggaaacatacatgg |
217 |
Q |
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| T |
37792749 |
caaatatctccgcaaccatcttcaagcgaattgtcttgcataacaatggacaatgcaattcttgatgataatgacctttcttttatggaaacatacatgg |
37792848 |
T |
|
| Q |
218 |
acaattttagtgagagtttccggacagagccatatatgatagacaattcatatgtcccccataatcaccctacaatggatgaaaccaagaaacttgaagg |
317 |
Q |
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| T |
37792849 |
agaattttagtgagaatttctggacagagccatatatgatagacaattcatatgtcccccataatcaccctacaatggaagaaaccaagaaacttgaagg |
37792948 |
T |
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| Q |
318 |
agtttttgagaacaacatcgatcccaatattacgagtccacaatcttcgcaaccattttcaagtggattctcttgcataacaacagaaaatttcgcttcc |
417 |
Q |
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| T |
37792949 |
agtttttgagaacaatatcgatcccaatattacgagtccactatcttcacaaccattttcaagtggattctcttgcataacaacagaaaatttcgcttcc |
37793048 |
T |
|
| Q |
418 |
actatatcacatgaaaattcagtttttgatggcagtgaacttccggttatggatgcattcatagagactgtgagtgaat |
496 |
Q |
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| T |
37793049 |
actatatcacatgaaaattcagtttttgatggtagtgaacttccgtttatggatgcattcatggagactgtgagtgaat |
37793127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 173 - 435
Target Start/End: Original strand, 37793272 - 37793534
Alignment:
| Q |
173 |
caattcttgatgataatgacctttcttttatggaaacatacatggacaattttagtgagagtttccggacagagccatatatgatagacaattcatatgt |
272 |
Q |
| |
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||||||||||||| ||||||||| ||||||||| ||||||| || ||||| ||||||| |||| || |||||||||||||||| |||| |||| || | |
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| T |
37793272 |
caattcttgatgacaatgaccttcattttatggatgcatacatagagaatttgagtgagaatttctggtcagagccatatatgattgacagttcacattt |
37793371 |
T |
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| Q |
273 |
cccccataatcaccctacaatggatgaaaccaagaaacttgaaggagtttttgagaacaacatcgatcccaatattacgagtccacaatcttcgcaacca |
372 |
Q |
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| T |
37793372 |
ccttcgtaatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagtacaacattgatcccaatagtgttagtccagtatcttcacaacca |
37793471 |
T |
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| Q |
373 |
ttttcaagtggattctcttgcataacaacagaaaatttcgcttccactatatcacatgaaaat |
435 |
Q |
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| |||| ||||||||||| ||||||| |||||| | ||||||| ||||||||||||||| |
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| T |
37793472 |
tcatcaaatggattctcttcaataacaatggaaaatgttacttccacaatatcacatgaaaat |
37793534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 37793173 - 37793246
Alignment:
| Q |
41 |
ataatcaccctacattggaagaacctaagaaatttgaaggagttttagagaacaacaatgatcctaatattgca |
114 |
Q |
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|||| |||||||||||||||||| | || |||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
37793173 |
ataagcaccctacattggaagaagccaataaatttgaaggagttttagagaacaacaataatcctaatactgca |
37793246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 396
Target Start/End: Original strand, 37809272 - 37809388
Alignment:
| Q |
280 |
aatcaccctacaatggatgaaaccaagaaacttgaaggagtttttgagaacaacatcgatcccaatattacgagtccacaatcttcgcaaccattttcaa |
379 |
Q |
| |
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||||||||||||||||| || |||||||||||| || | | || |||||||||| ||| ||||||||||||||||| |||||| ||||||| | ||| |
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| T |
37809272 |
aatcaccctacaatggaaaaacccaagaaacttggagaaatgttagagaacaacagtgatttcaatattacgagtccaccatcttcacaaccatctacaa |
37809371 |
T |
|
| Q |
380 |
gtggattctcttgcata |
396 |
Q |
| |
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||| || |||||||||| |
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| T |
37809372 |
gtgcatcctcttgcata |
37809388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 239 - 334
Target Start/End: Original strand, 37793134 - 37793229
Alignment:
| Q |
239 |
ggacagagccatatatgatagacaattcatatgtcccccataatcaccctacaatggatgaaaccaagaaacttgaaggagtttttgagaacaaca |
334 |
Q |
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|||||||||||||||||||||||| ||| ||| ||| |||| ||||||||| |||| ||| |||| ||| ||||||||||||| |||||||||| |
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| T |
37793134 |
ggacagagccatatatgatagacacttcctattccccatataagcaccctacattggaagaagccaataaatttgaaggagttttagagaacaaca |
37793229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 37793378 - 37793508
Alignment:
| Q |
42 |
taatcaccctacattggaagaacctaagaaatttgaaggagttttagagaacaacaatgatcctaatattgcaaatcaaatatctccacaaccatcttca |
141 |
Q |
| |
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|||||||| |||| |||||||| | |||||| ||||||||||||| ||| |||||| |||||| |||| || | || | ||||| |||||||||| ||| |
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| T |
37793378 |
taatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagtacaacattgatcccaatagtgttagtccagtatcttcacaaccatcatca |
37793477 |
T |
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| Q |
142 |
agcgaattgtcttgcataacaatggacaatg |
172 |
Q |
| |
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| | ||| |||| ||||||||||| |||| |
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| T |
37793478 |
aatggattctcttcaataacaatggaaaatg |
37793508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 37809254 - 37809331
Alignment:
| Q |
25 |
aaagattcaaattcaaataatcaccctacattggaagaacctaagaaatttgaaggagttttagagaacaacaatgat |
102 |
Q |
| |
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||||| ||||||||||| |||||||||||| ||||| |||| |||||| ||| || | | ||||||||||||| |||| |
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| T |
37809254 |
aaagactcaaattcaaaaaatcaccctacaatggaaaaacccaagaaacttggagaaatgttagagaacaacagtgat |
37809331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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