View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7041_low_3 (Length: 407)
Name: NF7041_low_3
Description: NF7041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7041_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 24891024 - 24890642
Alignment:
| Q |
1 |
attattctcactccaaaccacactcttcgtagactcatccaagcatggtgcaccatgaattcttcttatggaattgataggattccaacaccaaaacctc |
100 |
Q |
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| T |
24891024 |
attattctcactccaaaccacactcttcgtagactcatccaagcatggtgcaccatgaattcttcttatggaattgaaaggattccaacaccaaaacctc |
24890925 |
T |
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| Q |
101 |
caacaacaaaaacccttgtagaaaaactcctcaaagaagcttctgattcttcagattcacctcatttgcttattcaaaccctaaaaaagctcaaaacaat |
200 |
Q |
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| T |
24890924 |
caacaacaaaaaaccttatagaaaaactcctcaaagaagcttctgattc---------acctcatttgcttattcaaaccctaaaaaagctcaaaacaat |
24890834 |
T |
|
| Q |
201 |
agcatccgagagcgaaacaaatagacggtgtatcgaatcggccggcgctgttgagttcttagcatcaatagtaacaaaaaacaacactggttgttcatct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| |||||||||| ||||||||||| |
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| T |
24890833 |
tgcatccgagagcgaaacaaatagacggtgtatcgaatcggcaggcgctgtcgagtttttagcatcaatagtaacacaaaacaacacaagttgttcatct |
24890734 |
T |
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| Q |
301 |
tcatgttcaacaacggaattaattgaagctagctttgatgatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaagatga |
392 |
Q |
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| T |
24890733 |
tcatgttcagcaacagaattaattgaagctagctttgatgatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaagatga |
24890642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 24906402 - 24906784
Alignment:
| Q |
1 |
attattctcactccaaaccacactcttcgtagactcatccaagcatggtgcaccatgaattcttcttatggaattgataggattccaacaccaaaacctc |
100 |
Q |
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| T |
24906402 |
attattctcactccaaaccacactcttcgtagactcatccaagcatggtgcaccatgaattcttcttatggaattgaaaggattccaacaccaaaacctc |
24906501 |
T |
|
| Q |
101 |
caacaacaaaaacccttgtagaaaaactcctcaaagaagcttctgattcttcagattcacctcatttgcttattcaaaccctaaaaaagctcaaaacaat |
200 |
Q |
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| T |
24906502 |
caacaacaaaaatccttatagaaaaactcctcaaagaagcttctgatt---------cacctcatttgcttattcaaaccctaaaaaagctcaaaacaat |
24906592 |
T |
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| Q |
201 |
agcatccgagagcgaaacaaatagacggtgtatcgaatcggccggcgctgttgagttcttagcatcaatagtaacaaaaaacaacactggttgttcatct |
300 |
Q |
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| T |
24906593 |
tgcctctgagagcgaaacaaatagacggtgtatcgaatcggctggcgctgtcgagtttttagcatcaatagtaacacaaaacaacacaagttgttcatct |
24906692 |
T |
|
| Q |
301 |
tcatgttcaacaacggaattaattgaagctagctttgatgatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaagatga |
392 |
Q |
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| T |
24906693 |
tcatgttcagcaacagaattaattgaagctagctttgatgatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaagatga |
24906784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 24898943 - 24899325
Alignment:
| Q |
1 |
attattctcactccaaaccacactcttcgtagactcatccaagcatggtgcaccatgaattcttcttatggaattgataggattccaacaccaaaacctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||| |
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| T |
24898943 |
attattctcactccaaaccacactcttcgtagactcatccaagcatggtgcaccatgaattcttcttttggaattgaaaggattccaactccaaaacctc |
24899042 |
T |
|
| Q |
101 |
caacaacaaaaacccttgtagaaaaactcctcaaagaagcttctgattcttcagattcacctcatttgcttattcaaaccctaaaaaagctcaaaacaat |
200 |
Q |
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| T |
24899043 |
caacaacaaaaatccttatagaaaaactcctcaaagaagcttctgatt---------cacctcatttgcttattcaaaccctaaaaaagctcaaaacaat |
24899133 |
T |
|
| Q |
201 |
agcatccgagagcgaaacaaatagacggtgtatcgaatcggccggcgctgttgagttcttagcatcaatagtaacaaaaaacaacactggttgttcatct |
300 |
Q |
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|| || ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| |||||||||| ||||||||||| |
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| T |
24899134 |
tgcttctgagagcgaaacaaatagacggtgtatcgaatcggctggcgctgtcgagtttttagcatcaatagtaacacaaaacaacacaagttgttcatct |
24899233 |
T |
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| Q |
301 |
tcatgttcaacaacggaattaattgaagctagctttgatgatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaagatga |
392 |
Q |
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| T |
24899234 |
tcatgttcagcaacagaattaattgaagctagctttgatgatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaagatga |
24899325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 392
Target Start/End: Original strand, 5284950 - 5285001
Alignment:
| Q |
340 |
gatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaagatga |
392 |
Q |
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|||||||| ||||||| |||||||||||| ||||||||||||||||| ||||| |
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| T |
5284950 |
gatgatgacgttgaag-ttttgcttttgagttcaaaataggtgcagaggatga |
5285001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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