View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7041_low_4 (Length: 307)
Name: NF7041_low_4
Description: NF7041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7041_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 26832718 - 26833000
Alignment:
| Q |
1 |
agaagcaagaagagcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26832718 |
agaagcaagaagagcgttgaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatca |
26832817 |
T |
|
| Q |
101 |
tgaacagtttcatcaatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||| || || || ||| | ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26832818 |
tgaacagtttcatcaatgatatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
26832917 |
T |
|
| Q |
201 |
gaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttacta |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26832918 |
gaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttacta |
26833000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 26434007 - 26434289
Alignment:
| Q |
1 |
agaagcaagaagagcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26434007 |
agaagcaagaagagcgttgaaacatacaagatctacatcttcaaggttctgaaacaagttcatccagacattggtatctcaagcaaagccatgggtatca |
26434106 |
T |
|
| Q |
101 |
tgaacagtttcatcaatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||| || || || ||| | ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26434107 |
tgaacagtttcatcaatgatatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
26434206 |
T |
|
| Q |
201 |
gaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttacta |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26434207 |
gaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttacta |
26434289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 26435787 - 26436067
Alignment:
| Q |
1 |
agaagcaagaagagcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26435787 |
agaagcaagaagagcgttgaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatca |
26435886 |
T |
|
| Q |
101 |
tgaacagtttcatcaatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||| || || ||| | ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26435887 |
tgaacagtttcatcaatgatatcttcgagaaactcactcaagaatcttccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
26435986 |
T |
|
| Q |
201 |
gaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttac |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26435987 |
gaccgcggtcaggcttgttctgcccggtgaattggccaagcatgatgtttctgagggtaccaaggctgtcactaagtttac |
26436067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 23416004 - 23415722
Alignment:
| Q |
1 |
agaagcaagaagagcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatca |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| || ||||| || ||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
23416004 |
agaagcaagaagaatgttgaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatca |
23415905 |
T |
|
| Q |
101 |
tgaacagtttcatcaatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||| ||||| || || || ||| | ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23415904 |
tgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
23415805 |
T |
|
| Q |
201 |
gaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttacta |
283 |
Q |
| |
|
||| || ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23415804 |
gactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgactaagtttacta |
23415722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 24307206 - 24307488
Alignment:
| Q |
1 |
agaagcaagaagagcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatca |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || | |
|
|
| T |
24307206 |
agaagcaagaagaatgttgaaacatacaagatctatatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataa |
24307305 |
T |
|
| Q |
101 |
tgaacagtttcatcaatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| || || || ||| | ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24307306 |
tgaacagtttcatcaatgatatcttcgagaaactagctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
24307405 |
T |
|
| Q |
201 |
gaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttacta |
283 |
Q |
| |
|
||| || ||||| |||||||| || |||||||||||||||||||||||||||||||||||||| ||||| || ||||| |||| |
|
|
| T |
24307406 |
gactgctgtcagacttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaagctgtgaccaagttcacta |
24307488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 23408835 - 23408553
Alignment:
| Q |
1 |
agaagcaagaagagcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatca |
100 |
Q |
| |
|
||||| ||||||| || |||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
23408835 |
agaagtaagaagaatgtagaaacatacaagatctacatcttcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagcgatgggtatca |
23408736 |
T |
|
| Q |
101 |
tgaacagtttcatcaatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||| ||||| || || || ||| | ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23408735 |
tgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
23408636 |
T |
|
| Q |
201 |
gaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttacta |
283 |
Q |
| |
|
|||||||||||| |||||||| || || |||||||||||||||||||||||||| || ||||||||||| ||||||||||||| |
|
|
| T |
23408635 |
gaccgcggtcagacttgttcttcctggagaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacta |
23408553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 23885810 - 23886092
Alignment:
| Q |
1 |
agaagcaagaagagcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatca |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| || ||||| || ||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
23885810 |
agaagcaagaagaatgttgaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatca |
23885909 |
T |
|
| Q |
101 |
tgaacagtttcatcaatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||| ||||| || || || ||| | ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23885910 |
tgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
23886009 |
T |
|
| Q |
201 |
gaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttacta |
283 |
Q |
| |
|
||| || |||||||||||||| || ||||||||||||||||||||||| |||||||| ||||| ||||| || |||||||||| |
|
|
| T |
23886010 |
gactgcagtcaggcttgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttacta |
23886092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 23453667 - 23453385
Alignment:
| Q |
1 |
agaagcaagaagagcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatca |
100 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||| || ||||| || ||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
23453667 |
agaagcaagaagaatgtagaaacatacaagatctacatcttcaaagttctgaatcatgttcacccagacattggtatctcaagcaaggccatgggtatca |
23453568 |
T |
|
| Q |
101 |
tgaacagtttcatcaatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||| ||||| || || || ||| | ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23453567 |
tgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
23453468 |
T |
|
| Q |
201 |
gaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttacta |
283 |
Q |
| |
|
||| || ||||| |||||||| || ||||||||||||||||||||||||||||| || ||||||||||| || |||||||||| |
|
|
| T |
23453467 |
gactgcagtcagtcttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgaccaagtttacta |
23453385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 23402057 - 23402339
Alignment:
| Q |
1 |
agaagcaagaagagcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatca |
100 |
Q |
| |
|
||||| ||||||| || |||||||||||||||||||||||||| || ||||| || ||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
23402057 |
agaagtaagaagaatgtagaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatca |
23402156 |
T |
|
| Q |
101 |
tgaacagtttcatcaatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||| ||||| || || || ||| | ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23402157 |
tgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
23402256 |
T |
|
| Q |
201 |
gaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttacta |
283 |
Q |
| |
|
||| || |||||||||||||| || ||||||||||||||||||||||| || ||||| ||||| ||||| || |||||||||| |
|
|
| T |
23402257 |
gactgcagtcaggcttgttcttcctggtgaattggccaagcatgctgtctcagagggaaccaaagctgtgaccaagtttacta |
23402339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 23868715 - 23868997
Alignment:
| Q |
1 |
agaagcaagaagagcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatca |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| || ||||| || ||||||||||| |||||||||||||||||||||||||| || | |
|
|
| T |
23868715 |
agaagcaagaagaatgttgaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaagccatgggaataa |
23868814 |
T |
|
| Q |
101 |
tgaacagtttcatcaatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||| || || || ||| | ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23868815 |
tgaacagtttcatcaatgatatcttcgagaaacttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
23868914 |
T |
|
| Q |
201 |
gaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttacta |
283 |
Q |
| |
|
||| || ||||| |||||||| || |||||||||||||| |||||||||||||| || || || ||||| |||||||| |||| |
|
|
| T |
23868915 |
gactgctgtcagacttgttcttcctggtgaattggccaaacatgctgtttctgaaggaacaaaagctgtgactaagttcacta |
23868997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 34662336 - 34662056
Alignment:
| Q |
1 |
agaagcaagaagagcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatca |
100 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| | |
|
|
| T |
34662336 |
agaaacaagaagagcgttgaaacctacaagatctacatcttcaaggttctgaaacaagttcaccctgacattggtatctcaagcaaagccatgggtatta |
34662237 |
T |
|
| Q |
101 |
tgaacagtttcatcaatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||| |||||||| || || || ||||| || |||||||| || || ||||| ||||||||||| |
|
|
| T |
34662236 |
tgaacagtttcatcaatgatatcttcgagaagctcgctcaagaatcttccagacttgcaaggtataacaagaagccgacgataacttcgagggaaattca |
34662137 |
T |
|
| Q |
201 |
gaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttac |
281 |
Q |
| |
|
||| || || ||||||||||| || || |||||||| ||||||||||| |||||||||||||| ||||| || |||||||| |
|
|
| T |
34662136 |
gactgctgttaggcttgttcttcctggagaattggctaagcatgctgtgtctgagggtaccaaagctgtaacgaagtttac |
34662056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 108 - 240
Target Start/End: Complemental strand, 23451920 - 23451788
Alignment:
| Q |
108 |
tttcatcaatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcg |
207 |
Q |
| |
|
||||||||| |||||||| ||||| || ||||| |||| || || || ||| | ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23451920 |
tttcatcaacgatatctttgagaagctcgctcaagaatactccagacttgctcgctacaacaagaagccaacaatcacttcaagggaaattcagaccgca |
23451821 |
T |
|
| Q |
208 |
gtcaggcttgttctgcccggtgaattggccaag |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
23451820 |
gtcaggcttgttctgcccggtgaattggccaag |
23451788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 31632848 - 31632896
Alignment:
| Q |
215 |
ttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaa |
263 |
Q |
| |
|
||||| |||||| ||||||||| ||||||| ||||| |||||||||||| |
|
|
| T |
31632848 |
ttgttgtgcccgatgaattggctaagcatgttgtttgtgagggtaccaa |
31632896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 5e-62; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 41670383 - 41670651
Alignment:
| Q |
1 |
agaagcaagaagagcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatca |
100 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||| || || || ||||| || || ||||||||||||||||| || ||||| |||| |
|
|
| T |
41670383 |
agaaacaagaagagcgttgaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggtatctcaagcaaggctatggggatca |
41670482 |
T |
|
| Q |
101 |
tgaacagtttcatcaatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattca |
200 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| || |||||||||||||| || || || |||||||| |||||||| ||||||||||| |||| || || |
|
|
| T |
41670483 |
tgaacagcttcatcaatgatatctttgagaagctcgctcaggaatcttccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagataca |
41670582 |
T |
|
| Q |
201 |
gaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgt |
269 |
Q |
| |
|
||| || || | |||||||| ||||||||| | || ||||||||||| |||||||| ||||||||||| |
|
|
| T |
41670583 |
gactgctgttcgtcttgttctccccggtgaacttgctaagcatgctgtctctgagggaaccaaggctgt |
41670651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 40795752 - 40796032
Alignment:
| Q |
1 |
agaagcaagaagagcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatca |
100 |
Q |
| |
|
|||| |||||||||||| ||||| ||||||||||||||||||||||| || || || ||||| || || ||||| ||||| ||||| || ||||| |||| |
|
|
| T |
40795752 |
agaaacaagaagagcgtagaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggaatctccagcaaggctatggggatca |
40795851 |
T |
|
| Q |
101 |
tgaacagtttcatcaatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattca |
200 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| || ||||||||||| || || |||||| | ||||| ||||| || || ||||| || | || ||||| |
|
|
| T |
40795852 |
tgaacagtttcatcaatgacatctttgagaagctcgctcaggaatcatccagactcgctcgctacaacaagaaacctaccatcacctctcgtgagattca |
40795951 |
T |
|
| Q |
201 |
gaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttac |
281 |
Q |
| |
|
||| || || | || ||||| ||||| ||| | |||||||| ||||| || ||||| ||||| || |||||||| ||||| |
|
|
| T |
40795952 |
gactgctgttcgtctcgttcttcccggcgaacttgccaagcacgctgtctccgagggaaccaaagcagtcactaaatttac |
40796032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 269
Target Start/End: Original strand, 29391455 - 29391717
Alignment:
| Q |
7 |
aagaagagcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaaca |
106 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||||||||| || ||||| ||||| || ||||| ||||| || |||||| ||||| || ||||||| |
|
|
| T |
29391455 |
aagaagagcgttgaaacctataagatttacatcttcaaggttctcaaacaggttcatcctgatataggtatttcttccaaagctatggggattatgaaca |
29391554 |
T |
|
| Q |
107 |
gtttcatcaatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgc |
206 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||| |||| || | ||| | ||||| ||||| || || || || || ||||| ||||| || || |
|
|
| T |
29391555 |
gtttcatcaatgatatctttgagaaactcgctcaggaagcttctagattggctcgttacaacaagaaaccgacgattacgtcgagggagattcaaacggc |
29391654 |
T |
|
| Q |
207 |
ggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgt |
269 |
Q |
| |
|
|| | | ||||| |||||||||||||| || ||||||||||| || || ||||||||||| |
|
|
| T |
29391655 |
tgtgcgtttggttcttcccggtgaattggcgaaacatgctgtttccgaaggaaccaaggctgt |
29391717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 169 - 282
Target Start/End: Original strand, 33216596 - 33216709
Alignment:
| Q |
169 |
aagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctg |
268 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || || ||||| |||||||| | |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33216596 |
aagaagccaacaatcacttcaaggaaaattcaaactgctgtcagacttgttcttcttggtgaattggccaaacatgctgtttctgagggtaccaaggctg |
33216695 |
T |
|
| Q |
269 |
tcactaagtttact |
282 |
Q |
| |
|
| || ||||||||| |
|
|
| T |
33216696 |
tgaccaagtttact |
33216709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 45576397 - 45576454
Alignment:
| Q |
212 |
ggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgt |
269 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| |||||||||||||||||| ||||| |
|
|
| T |
45576397 |
ggcttgttctgcccgatgaattggctaagcatgttgtttctgagggtaccaaagctgt |
45576454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 40180559 - 40180297
Alignment:
| Q |
7 |
aagaagagcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaaca |
106 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||||||||||| |||||||| ||||| || ||||| ||| | |||||||| || ||||| |||||||||| |
|
|
| T |
40180559 |
aagaaaagcgttgaaacctacaagatatacatcttcaaggttctgaaacaggttcatcctgatatcggtgtttcaagcaaggctatgggaatcatgaaca |
40180460 |
T |
|
| Q |
107 |
gtttcatcaatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgc |
206 |
Q |
| |
|
||||||| || |||||||| |||||||| ||||||||||| || | | |||||||| || |||||||| || || ||||| ||||| ||||| || || |
|
|
| T |
40180459 |
gtttcattaacgatatctttgagaaactcgctcaggaatcgtctcgtttggctaggtataacaagaagccgacgattacttctagggagattcaaactgc |
40180360 |
T |
|
| Q |
207 |
ggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgt |
269 |
Q |
| |
|
|| || | ||||| || || |||||||| || |||||||||||||| || || |||||||| |
|
|
| T |
40180359 |
tgttagattggttcttcctggagaattggctaaacatgctgtttctgaagggactaaggctgt |
40180297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 169 - 283
Target Start/End: Original strand, 47317433 - 47317547
Alignment:
| Q |
169 |
aagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctg |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | ||||| ||| |||| || |||||||||||||| |||| |||||||||||||||||| |||| |
|
|
| T |
47317433 |
aagaagccaacaatcacttcaagggaaattcaaactgttgtcagacttattcttcctggtgaattggccaaacatgttgtttctgagggtaccaaagctg |
47317532 |
T |
|
| Q |
269 |
tcactaagtttacta |
283 |
Q |
| |
|
| || |||||||||| |
|
|
| T |
47317533 |
tgaccaagtttacta |
47317547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 29684689 - 29684822
Alignment:
| Q |
7 |
aagaagagcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaaca |
106 |
Q |
| |
|
||||| ||| ||||||| |||||||| || || |||||||| || ||||||||||| || | |||||| | ||||| ||||| ||||| | || |||| |
|
|
| T |
29684689 |
aagaaaagcattgaaacctacaagatatatatattcaaggttctcaaacaagttcatcctgccattggtgtttcaagtaaagctatgggagttattaaca |
29684788 |
T |
|
| Q |
107 |
gtttcatcaatgatatcttcgagaaactagctca |
140 |
Q |
| |
|
||||| | || |||||||| ||||||| ||||| |
|
|
| T |
29684789 |
gtttcgtgaacgatatctttaagaaactcgctca |
29684822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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