View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7041_low_5 (Length: 258)
Name: NF7041_low_5
Description: NF7041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7041_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 84 - 239
Target Start/End: Complemental strand, 12801957 - 12801802
Alignment:
| Q |
84 |
caagtactatttaaattctagataaattctagactagatgatgaatagaaagacagcaataataagaggtataagtaataaacctgagtattttcaactg |
183 |
Q |
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| T |
12801957 |
caagtactatttaaattctagataaattctagactagatgatgaatagaaagacagcaataataagaggtataagtaataaacctgagtattttcaactg |
12801858 |
T |
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| Q |
184 |
attcagatgttgttggagtattattaatcttggtatgactgcggtatcgttcaatt |
239 |
Q |
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| T |
12801857 |
attcagatgttgttggagtattattaatcctggtatgactgcggtatcgttcaatt |
12801802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 133 - 239
Target Start/End: Complemental strand, 12778566 - 12778458
Alignment:
| Q |
133 |
aagacagcaataataagaggtataagtaa--taaacctgagtattttcaactgattcagatgttgttggagtattattaatcttggtatgactgcggtat |
230 |
Q |
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| T |
12778566 |
aagacagcaataataaaaggtatatgtaaaataaacctgagtattttcaactgattcagatgttgttggagtattattaatcctggtatgactgcggtat |
12778467 |
T |
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| Q |
231 |
cgttcaatt |
239 |
Q |
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| T |
12778466 |
cgttcaatt |
12778458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 12802056 - 12801965
Alignment:
| Q |
14 |
tgtgactggaatttgcatttatctatgaaaaacccgtaatttctagcatctagaaaatcaatcatttaaccaagtactatttaaattctaga |
105 |
Q |
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| T |
12802056 |
tgtgactggaatttgcatttatctaagaaaaacccgtaatttctagcatctagaaaatcaatcattttaccaagtactatttaaattctaga |
12801965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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