View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7042_high_3 (Length: 375)
Name: NF7042_high_3
Description: NF7042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7042_high_3 |
 | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 36 - 359
Target Start/End: Complemental strand, 33808213 - 33807892
Alignment:
| Q |
36 |
tgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
135 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33808213 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa |
33808116 |
T |
|
| Q |
136 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33808115 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
33808016 |
T |
|
| Q |
236 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33808015 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
33807916 |
T |
|
| Q |
336 |
tatgtgagtgaggattgtgttgtg |
359 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
33807915 |
tatgtgagtgaggattgtgttgtg |
33807892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 36 - 359
Target Start/End: Complemental strand, 33811867 - 33811546
Alignment:
| Q |
36 |
tgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
135 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33811867 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa |
33811770 |
T |
|
| Q |
136 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811769 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
33811670 |
T |
|
| Q |
236 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811669 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
33811570 |
T |
|
| Q |
336 |
tatgtgagtgaggattgtgttgtg |
359 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
33811569 |
tatgtgagtgaggattgtgttgtg |
33811546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 36 - 359
Target Start/End: Complemental strand, 33816785 - 33816464
Alignment:
| Q |
36 |
tgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
135 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33816785 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa |
33816688 |
T |
|
| Q |
136 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816687 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
33816588 |
T |
|
| Q |
236 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816587 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
33816488 |
T |
|
| Q |
336 |
tatgtgagtgaggattgtgttgtg |
359 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
33816487 |
tatgtgagtgaggattgtgttgtg |
33816464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 16698601 - 16698504
Alignment:
| Q |
119 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
214 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| || ||||||| | ||||||| | ||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
16698601 |
aattttagtgtggaaatccttctcaatgtgagaaagggaaaaattatgggacccttggacctcttaaaacttccactataatgataatgggaatacaa |
16698504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 22763905 - 22764002
Alignment:
| Q |
119 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
214 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| || ||||||||||||||||| | |||||||||| | | ||||||| ||||||||||||||| |
|
|
| T |
22763905 |
aattttagcatggaaaaccttctcaatatgagaaagggaaaaaccacgggaccattgggcctcttaaaacttatgctataatgataatgggaatacaa |
22764002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 35 - 354
Target Start/End: Complemental strand, 50603404 - 50603085
Alignment:
| Q |
35 |
ttgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaa |
134 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||| ||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
50603404 |
ttgttgggaaatgccagtacaatttctctcctccgtgaactcaaaatagacactttagcgaaaacgtaaaatgacacacaataaaattttagcgtggaaa |
50603305 |
T |
|
| Q |
135 |
accttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac |
234 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| |
|
|
| T |
50603304 |
accttctcaatgtgagtaagaaaaaaccacggaacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcacctttagatggac |
50603205 |
T |
|
| Q |
235 |
ctaactatgtatctcaatttgtagatacaactctc--acaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaa |
332 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
50603204 |
ctaactatatatctcaatttgtagatacaactctcatacaaattggctcactatatttttctct--cactcttatgaggaactttctatttttctctcaa |
50603107 |
T |
|
| Q |
333 |
ctctatgtgagtgaggattgtg |
354 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
50603106 |
ctctgtgtgagtgaggattgtg |
50603085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 36 - 286
Target Start/End: Original strand, 54967210 - 54967477
Alignment:
| Q |
36 |
tgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
124 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| |||| |||||||||||| ||||||||||| |||| |||||| || | |||||| |
|
|
| T |
54967210 |
tgttgggaaatgcctgcataatttccctcctccgtcaactcaaaataggcact--agcggaaacgtgaaataaaagcgtaatgacaca-aagagaatttt |
54967306 |
T |
|
| Q |
125 |
agcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctctt--aaatctccactataataataatgggaatacaa-atcttc |
220 |
Q |
| |
|
||||||||||||||||||||| |||| || |||||||||||||||||| | ||||||| ||| ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
54967307 |
agcgtggaaaaccttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttc |
54967406 |
T |
|
| Q |
221 |
accctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
286 |
Q |
| |
|
||||| ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
54967407 |
acccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
54967477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 36 - 233
Target Start/End: Original strand, 44782524 - 44782733
Alignment:
| Q |
36 |
tgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
124 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||| ||||||| |||| ||||||||||| |||| |||||| || | |||||| |
|
|
| T |
44782524 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt |
44782620 |
T |
|
| Q |
125 |
agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
220 |
Q |
| |
|
||||||||||||||||||||| |||| |||| |||||||||||||||| | ||||||||| | ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
44782621 |
agcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttggacctcttaaaacttccactataatgataatgggaatacaacaacttc |
44782720 |
T |
|
| Q |
221 |
accctcaggtgga |
233 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
44782721 |
acccttaggtgga |
44782733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 119 - 286
Target Start/End: Complemental strand, 39298908 - 39298736
Alignment:
| Q |
119 |
aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa-atc |
217 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| ||||||||| |||||||||| | |||||||||| ||||||||||| |||| |||||||||| | | |
|
|
| T |
39298908 |
aattttagtgtgaaaaaccttctcaatgtgatgaaggaaaaatcacgggacccttgtgcctcttaaacttccactataatgataaagggaatacaacaac |
39298809 |
T |
|
| Q |
218 |
ttcaccctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
286 |
Q |
| |
|
|||||||| ||||||| ||||| ||| | |||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
39298808 |
ttcacccttaggtggatctaactacaatatatctctcaatttgtaaggac-actctcacaaattggctcactat |
39298736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 18556392 - 18556511
Alignment:
| Q |
117 |
aaaattttagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||| |||||||||||||||| ||||||||||| ||||||||||| | |||| |||||||| |
|
|
| T |
18556392 |
aaaattttagcgtggaaaaccttctcaatctgagaaaggcaaaaaaccacgggaccctcgagcctcttaaacttccactataatgacaatgagaatacaa |
18556491 |
T |
|
| Q |
215 |
-atcttcaccctcaggtgga |
233 |
Q |
| |
|
| ||||||||| ||||||| |
|
|
| T |
18556492 |
caacttcacccttaggtgga |
18556511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 188 - 292
Target Start/End: Original strand, 31725346 - 31725448
Alignment:
| Q |
188 |
tccactataataataatgggaatacaaatcttcaccctcaggtggacctaactatgtatctcaatttgtagatacaactctcacaaattggctcactata |
287 |
Q |
| |
|
|||| ||||| ||||||| |||||||||||||||| || |||||||||| || |||||||||||||||||| |||| |||||||||||| | |||||| |
|
|
| T |
31725346 |
tccaatataacaataatgagaatacaaatcttcacacttaggtggaccttacgatgtatctcaatttgtag--acaattctcacaaattgattaactata |
31725443 |
T |
|
| Q |
288 |
ttttt |
292 |
Q |
| |
|
||||| |
|
|
| T |
31725444 |
ttttt |
31725448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 233
Target Start/End: Original strand, 54979933 - 54980051
Alignment:
| Q |
119 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctctt--aaatctccactataataataatgggaatacaa- |
214 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| || |||||||||||||||||| | ||||||| ||| ||||||||||| ||||||||||||||| |
|
|
| T |
54979933 |
aattttagcatggaaaaccttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaac |
54980032 |
T |
|
| Q |
215 |
atcttcaccctcaggtgga |
233 |
Q |
| |
|
| ||||||||| ||||||| |
|
|
| T |
54980033 |
aacttcacccttaggtgga |
54980051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 17645897 - 17645800
Alignment:
| Q |
115 |
acaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | || |||||||||||||| | | ||| ||||||| ||||||||||| |||||| ||||||| |
|
|
| T |
17645897 |
acaaaattttagcgtggaaaaccttctcaatataa--aaaaaaaaaccacgggactcttgagcgtcttaaacttccactataatgataatgacaatacaa |
17645800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 35 - 335
Target Start/End: Original strand, 31151925 - 31152226
Alignment:
| Q |
35 |
ttgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaa |
134 |
Q |
| |
|
||||||||||||||| || |||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
31151925 |
ttgttgggaaatgcctgcataatttccctcctctctgaactcaaaataggcactttagcggaaacataaaatgacacacaacaaaattttaatgtggaaa |
31152024 |
T |
|
| Q |
135 |
accttctcaatgtgagtaaggaaaa-accacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtgga |
233 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31152025 |
accttctcaatgtgagtaagaaaaaaaccacgggatccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcagatgga |
31152124 |
T |
|
| Q |
234 |
cctaactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaac |
333 |
Q |
| |
|
|||||||| |||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31152125 |
cctaactacgtatctaaatttatagatacaactctcacaaattggcttactatatttttctctcacactcttacgaggaactctctatttttctctcaac |
31152224 |
T |
|
| Q |
334 |
tc |
335 |
Q |
| |
|
|| |
|
|
| T |
31152225 |
tc |
31152226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 112 - 295
Target Start/End: Original strand, 1111378 - 1111564
Alignment:
| Q |
112 |
acaacaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatct-ccactataataataatgggaat |
210 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||||| | |||||||||| || ||||| | |||| ||||||||||| | | |||||||||||| |||| |
|
|
| T |
1111378 |
acaacaaaattttagtgtagaaaaccttctgaatgtaaataaggaaaaatcatgggactcataagtctcttaaatctactataataataataatgagaat |
1111477 |
T |
|
| Q |
211 |
acaaatcttcaccctcaggtggacctaactatgtatctcaatttg--tagatacaactctcacaaattggctcactatatttttctc |
295 |
Q |
| |
|
||||| |||||||| | || ||||||||||||||||||||||| |||||| | ||||||||||||| || |||||||||||| |
|
|
| T |
1111478 |
acaaactttcacccttacgtaaacctaactatgtatctcaatttgtatagatatatttctcacaaattggttccttatatttttctc |
1111564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 22981621 - 22981504
Alignment:
| Q |
119 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-a |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| | |
|
|
| T |
22981621 |
aattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaaca |
22981522 |
T |
|
| Q |
216 |
tcttcaccctcaggtgga |
233 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
22981521 |
acttcacccttaggtgga |
22981504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 119 - 233
Target Start/End: Original strand, 23806787 - 23806904
Alignment:
| Q |
119 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-a |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| | |
|
|
| T |
23806787 |
aattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaaca |
23806886 |
T |
|
| Q |
216 |
tcttcaccctcaggtgga |
233 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
23806887 |
acttcacccttaggtgga |
23806904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 22981712 - 22981647
Alignment:
| Q |
34 |
gttgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgt |
101 |
Q |
| |
|
|||||||||||||| | || ||||||||| |||||||||||| |||| |||||| |||||||||||| |
|
|
| T |
22981712 |
gttgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcac--tagcggaaacgt |
22981647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 23806696 - 23806761
Alignment:
| Q |
34 |
gttgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgt |
101 |
Q |
| |
|
|||||||||||||| | || ||||||||| |||||||||||| |||| |||||| |||||||||||| |
|
|
| T |
23806696 |
gttgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcac--tagcggaaacgt |
23806761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 35 - 251
Target Start/End: Original strand, 29706853 - 29707069
Alignment:
| Q |
35 |
ttgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaa |
134 |
Q |
| |
|
||||||| ||||||| | ||||||| ||| ||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||| | ||||| |
|
|
| T |
29706853 |
ttgttggaaaatgcctccataatttctctcatccgtgaacttaaaatatgcactttagcaaaaatgtaaaatgacacacaacaaaattttagtgaggaaa |
29706952 |
T |
|
| Q |
135 |
accttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac |
234 |
Q |
| |
|
||||||||||| ||||||||||| || |||||||| | || |||||||||||||||||||||||||||||| | | |||||||||||||| ||||||| |
|
|
| T |
29706953 |
accttctcaatatgagtaaggaacaatcacgggactcatagacctcttaaatctccactataataataatggaataaaaaatcttcaccctcgggtggac |
29707052 |
T |
|
| Q |
235 |
ctaactatgtatctcaa |
251 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
29707053 |
ctaactatgtatctcaa |
29707069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 27642225 - 27642132
Alignment:
| Q |
119 |
aattttagcgtggaaaaccttctcaatgtgagtaagg-aaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaata |
211 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| |||| ||||| |||||| || | |||||||| |||||||||||||||||||||||| |
|
|
| T |
27642225 |
aattttggcgtgtaaaaccttctcaatgtgagaaaggaaaaaatcacggggtcctcgggtctcttaaacttccactataataataatgggaata |
27642132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 54 - 286
Target Start/End: Original strand, 26516 - 26752
Alignment:
| Q |
54 |
taatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaaccttctcaatgtgagtaa |
153 |
Q |
| |
|
|||| |||||||| |||||||| ||||||| |||||||||| ||||||||||| |||| ||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
26516 |
taatctccctccttcgtgaactcaaaatagacactttagcgaaaacgtaaaataacac--aacaaaattttagggtggaaaaccttttcaatgtgagtaa |
26613 |
T |
|
| Q |
154 |
ggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaat-cttcaccctcaggtggacctaacta-----tgtatc |
247 |
Q |
| |
|
|||||||| ||||||||| | |||||||||| |||||| |||| |||| | |||||||| | || |||||| ||||||| || |||| | | || |
|
|
| T |
26614 |
ggaaaaactacgggacccttgggcctcttaaacttccactctaatgataacgagaatacaactactccacccttaggtggatctcactacaatttatctc |
26713 |
T |
|
| Q |
248 |
tcaatttgtagatacaactctcacaaattggctcactat |
286 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||| |
|
|
| T |
26714 |
tcaatttgtaaggaacactctcacaaattggctcactat |
26752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 286
Target Start/End: Original strand, 25857131 - 25857395
Alignment:
| Q |
36 |
tgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
124 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| | |||||| |
|
|
| T |
25857131 |
tgttgggaaatgcctgcataatttccctcctccgtgaacttaaaataggcact--agcggaaacgtgaaatataagcgtaatgacacagag---aatttt |
25857225 |
T |
|
| Q |
125 |
agcgtggaaaaccttctcaatgtgag-taaggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttca |
221 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| | ||||| |
|
|
| T |
25857226 |
agcgtggaaaaccttctcaatgtgagaaaaggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttca |
25857325 |
T |
|
| Q |
222 |
ccctcaggtggacctaact---atgtatctc--aatttgtagatacaactctcacaaattggctcactat |
286 |
Q |
| |
|
|| | ||||||| || ||| || |||||| |||||||| | ||||||||||||||||||||||| |
|
|
| T |
25857326 |
cctttaggtggatctcactacaatatatctcttaatttgtaaggaacactctcacaaattggctcactat |
25857395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 36 - 233
Target Start/End: Original strand, 4842648 - 4842857
Alignment:
| Q |
36 |
tgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
124 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||| |||||||||||| ||||||||||| |||| |||||| || | |||||| |
|
|
| T |
4842648 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcact--agcggaaacgtgaaatataagtgtaatgacaca-aagagaatttt |
4842744 |
T |
|
| Q |
125 |
agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
220 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||| |||||| | |||||||||| | ||||||||||| ||||| ||||||||| | |||| |
|
|
| T |
4842745 |
agcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacaggacccttgggcctcttaaaacttccactataatgataataggaatacaacaacttc |
4842844 |
T |
|
| Q |
221 |
accctcaggtgga |
233 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
4842845 |
acccttaggtgga |
4842857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 13465046 - 13465165
Alignment:
| Q |
117 |
aaaattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||| |||||| | |||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
13465046 |
aaaattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacaggacccttgggcctcttaaaacatccactataatgataatgggaatacaa |
13465145 |
T |
|
| Q |
215 |
-atcttcaccctcaggtgga |
233 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
13465146 |
caagttcaccctcaggtgga |
13465165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 36 - 286
Target Start/End: Original strand, 4835575 - 4835840
Alignment:
| Q |
36 |
tgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaatg-acac------aca-acaaaattttagc |
127 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| |||||| |||||||||||| || |||||||| |||| | || ||| | | ||||||||| |
|
|
| T |
4835575 |
tgttgggaaatgcctgcataatttccctcctccatgaactcaaaataggcact--agtggaaacgtgaaatataaacgtaatgacacagagaattttagc |
4835672 |
T |
|
| Q |
128 |
gtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttcacc |
223 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||| | |||||||||| | ||||||||||| ||||||||||| ||| | ||||||| |
|
|
| T |
4835673 |
gtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttcacc |
4835772 |
T |
|
| Q |
224 |
ctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
286 |
Q |
| |
|
|| ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
4835773 |
cttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
4835840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 127 - 296
Target Start/End: Original strand, 8252686 - 8252853
Alignment:
| Q |
127 |
cgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctc |
226 |
Q |
| |
|
|||||||||||||||||| |||||||||| | |||||| |||||| ||||||| || || | ||||||||| ||||||||||| ||||| | | |
|
|
| T |
8252686 |
cgtggaaaaccttctcaacgtgagtaaggta------cgggactcgtaagtctcttaactcctcaatgtaataataacgggaatacaaagcttcatcttt |
8252779 |
T |
|
| Q |
227 |
aggtggacctaacta----tgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctct |
296 |
Q |
| |
|
|| ||||| ||| || ||||||||||||||||||||||||| ||| |||||| |||||||||||||||||| |
|
|
| T |
8252780 |
agatggacttaattaattatgtatctcaatttgtagatacaactatcataaattgactcactatatttttctct |
8252853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 27341025 - 27341120
Alignment:
| Q |
119 |
aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||| | ||||||||| || |||| ||| ||||||| ||||||| |
|
|
| T |
27341025 |
aattttagcgtggaaaaccttctcaatgtaagaaaggaaaaaccacgggacccttgtacctcttaaacttctactacaatgataatggaaatacaa |
27341120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 17845969 - 17845847
Alignment:
| Q |
110 |
acacaacaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaa |
209 |
Q |
| |
|
|||||| | |||||||| ||||||||||||| ||||||||| ||||||||||||| ||||| | ||||||||| ||||||||||| ||||||| || |
|
|
| T |
17845969 |
acacaagagaattttagagtggaaaaccttcccaatgtgaggaaggaaaaaccacaggacctttggacctcttaaacttccactataatgataatggaaa |
17845870 |
T |
|
| Q |
210 |
tacaa-atcttcaccctcaggtg |
231 |
Q |
| |
|
||||| | ||||||||| ||||| |
|
|
| T |
17845869 |
tacaacaacttcacccttaggtg |
17845847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 119 - 233
Target Start/End: Original strand, 24379370 - 24379487
Alignment:
| Q |
119 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-a |
215 |
Q |
| |
|
||||||| |||||||||||||||||||||||| || ||||||||||||||| | | |||||||||| | ||||||||||| ||||| ||||||||| | |
|
|
| T |
24379370 |
aattttaacgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggatctttgggcctcttaaaacttccactataatgataataggaatacaaca |
24379469 |
T |
|
| Q |
216 |
tcttcaccctcaggtgga |
233 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
24379470 |
acttcacccttaggtgga |
24379487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 24380164 - 24380113
Alignment:
| Q |
35 |
ttgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggca |
86 |
Q |
| |
|
||||||||||||||| || |||||||||||||| ||||||| |||||||||| |
|
|
| T |
24380164 |
ttgttgggaaatgcctgcataatttccctcctctgtgaactcaaaataggca |
24380113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 185
Target Start/End: Original strand, 38994151 - 38994218
Alignment:
| Q |
119 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaa |
185 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| || |||||||||||||||||| ||||||||||| |
|
|
| T |
38994151 |
aattttaacgtggaaaaccttctcaatgcgagaaagggaaaaaccacgggaccctcgagcctcttaaa |
38994218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 24379297 - 24379347
Alignment:
| Q |
54 |
taatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaat |
106 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
24379297 |
taatttctctcctccgtgaacttaaaataggcac--tagtggaaacgtaaaat |
24379347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 35 - 286
Target Start/End: Complemental strand, 41481816 - 41481548
Alignment:
| Q |
35 |
ttgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattt |
123 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||| ||||||| |||| ||||||||||| |||| |||||| || | ||||| |
|
|
| T |
41481816 |
ttgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaattt |
41481720 |
T |
|
| Q |
124 |
tagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atctt |
219 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| |||||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| | ||| |
|
|
| T |
41481719 |
tagcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaactt |
41481620 |
T |
|
| Q |
220 |
caccctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
286 |
Q |
| |
|
|||||| ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
41481619 |
cacccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
41481548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 36 - 286
Target Start/End: Complemental strand, 36167813 - 36167547
Alignment:
| Q |
36 |
tgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
124 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||| |||||||||||| ||||||||||| |||| |||||| || | |||||| |
|
|
| T |
36167813 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt |
36167717 |
T |
|
| Q |
125 |
agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
220 |
Q |
| |
|
||||||||||||||||||||| |||| |||| ||||||||| |||||| | |||||||||| | ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
36167716 |
agcgtggaaaaccttctcaatatgagaaagggaaaaaaccac-ggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc |
36167618 |
T |
|
| Q |
221 |
accctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
286 |
Q |
| |
|
||||| ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
36167617 |
acccttaggtggatctcactataatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
36167547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 230
Target Start/End: Original strand, 18951211 - 18951326
Alignment:
| Q |
119 |
aattttagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa- |
214 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||| |||||||||| |||| | || ||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
18951211 |
aattttagcatggaaaaccttctcaatgtgagaaagggaaaaaaccacgagacctttgggcttcttaaaacttccactataatgataatgggaatacaac |
18951310 |
T |
|
| Q |
215 |
atcttcaccctcaggt |
230 |
Q |
| |
|
| ||||||||| |||| |
|
|
| T |
18951311 |
aacttcacccttaggt |
18951326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 18951129 - 18951185
Alignment:
| Q |
41 |
ggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaac |
99 |
Q |
| |
|
||||||||| || |||||| ||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
18951129 |
ggaaatgcctgcataatttgcctcctccgtgaactcaaaataggcac--tagcggaaac |
18951185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 31206685 - 31206636
Alignment:
| Q |
75 |
ttaaaataggcactttagcggaaacgtaaaatgacacacaacaaaatttt |
124 |
Q |
| |
|
|||||||| ||||| | ||||||||||||||||||| |||||||||||| |
|
|
| T |
31206685 |
ttaaaataaacacttaaacggaaacgtaaaatgacacccaacaaaatttt |
31206636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 36 - 233
Target Start/End: Complemental strand, 2936 - 2727
Alignment:
| Q |
36 |
tgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
124 |
Q |
| |
|
||||||||||||| || |||||||||| ||||||||||| ||||||| |||| ||||||||||| |||| |||||| || | |||||| |
|
|
| T |
2936 |
tgttgggaaatgcatgcataatttcccttctccgtgaactcaaaatagacact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaatttt |
2840 |
T |
|
| Q |
125 |
agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
220 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
2839 |
agcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc |
2740 |
T |
|
| Q |
221 |
accctcaggtgga |
233 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
2739 |
acccttaggtgga |
2727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 36 - 286
Target Start/End: Original strand, 9757212 - 9757480
Alignment:
| Q |
36 |
tgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
124 |
Q |
| |
|
|||||| ||||||| || |||||||| ||||||||||||| |||||||||||| ||||||||||| |||| |||||| || | |||||| |
|
|
| T |
9757212 |
tgttggtaaatgcctgcataatttccttcctccgtgaactcaaaataggcact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaatttt |
9757308 |
T |
|
| Q |
125 |
agcgtggaaaaccttctcaatgtgagtaagg-aaaaaccacgggacccgtaagcctcttaaatc---tccactataataataatgggaatacaa-atctt |
219 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||| | |||||||||| ||||||||||| ||||||||||||||| | ||| |
|
|
| T |
9757309 |
agcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaaaacttccactataatgataatgggaatacaacaactt |
9757408 |
T |
|
| Q |
220 |
caccctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
286 |
Q |
| |
|
|||||| ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
9757409 |
cacccttaggtggatctcactataatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
9757480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 37286972 - 37287069
Alignment:
| Q |
117 |
aaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
214 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||| |||||||||| ||||| ||||||| ||||||||||||||||| |||||||| |
|
|
| T |
37286972 |
aaaattttagcatggaaaaccttctcaatgtgaaaaaggaaaaatcacgggacccttaagcatcttaaacttccactataataataataagaatacaa |
37287069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 119 - 231
Target Start/End: Original strand, 42682924 - 42683038
Alignment:
| Q |
119 |
aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-at |
216 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||| |||||||||| | ||||||||| | ||||||||||| ||||||||||||||| | |
|
|
| T |
42682924 |
aatttcagcgtggaaaaccttctcaatgtgagaaaggaaaaatcacgggacccttggacctcttaaaacttccactataatgataatgggaatacaacaa |
42683023 |
T |
|
| Q |
217 |
cttcaccctcaggtg |
231 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
42683024 |
cttcacccttaggtg |
42683038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 37038035 - 37037942
Alignment:
| Q |
121 |
ttttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
214 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| |||||||||||||| | |||||||||| | |||||||| |||||| |||||||| |
|
|
| T |
37038035 |
ttttagcgaggaaaaccttctcaatgtgagaaaggagaaaccacgggacccttgggcctcttaaactttcactataacgataatgagaatacaa |
37037942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 342306 - 342404
Alignment:
| Q |
119 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaa-aaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
214 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| || |||| ||||||||||| || | |||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
342306 |
aattttagcgtgaaaaaccttctcaatatgagaaatggaagaaaccacgggatccttgggcctcttaaaacttccactataatgataatgggaatacaa |
342404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 342217 - 342269
Alignment:
| Q |
36 |
tgttgggaaatgccagcttaatttccctcctccgtgaacttaaaataggcact |
88 |
Q |
| |
|
|||||| ||||||| || |||||| ||||||||||||||| |||||||||||| |
|
|
| T |
342217 |
tgttggaaaatgcctgcataattttcctcctccgtgaactcaaaataggcact |
342269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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