View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7042_high_4 (Length: 366)
Name: NF7042_high_4
Description: NF7042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7042_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 27196714 - 27196350
Alignment:
| Q |
1 |
tgatataattcaatgtaatcacgtatgttgttgttggacactgtcatgtgtcagacagtgagacacatcttcaattagaagtgtctttgctatagagctt |
100 |
Q |
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| T |
27196714 |
tgatataattcaatgtaatcacgtatgttgttgttggacactgtcatgtgtcagacagtgagacgcatcttcaattagaagtgtcggtgctatagagctt |
27196615 |
T |
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| Q |
101 |
caattaaagcaaatcatattcaaatgactaactaaatttctcagtaaataagtacaaaatcaacatttcaatcaaaacttnnnnnnnnnnntgaaatgaa |
200 |
Q |
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| T |
27196614 |
caattaaagcatatcatattcaaatgactaactaaatttctcagtaaataagtacaaaatcaacatttcaatcaaaactt--aaaaaaaaatgaaatgaa |
27196517 |
T |
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| Q |
201 |
gaaatttcacctcttttttgcaaccgacataaacaacatgaacaccatcaagaaaaccagtatc-aaaagctccttcatagtcaaccacttctcaccaac |
299 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27196516 |
gaaatttcacctcttttttgcaaccgacataaacaaccggaacaccatcaagaaaaccagtatcaaaaagctccttcatagtcaaccacttctcaccaac |
27196417 |
T |
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| Q |
300 |
cgtttcgttcttctcaatcttaacactctcagcagcgagtttagcagcagctgaaacatcttcacct |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27196416 |
cgtttcgttcttctcaatcttaacactctcagcagcgagtttagcagcagctgaaacatcttcacct |
27196350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 226 - 363
Target Start/End: Complemental strand, 26272582 - 26272444
Alignment:
| Q |
226 |
gacataaacaacatgaacaccatcaagaaaaccagtatcaaaa-gctccttcatagtcaaccacttctcaccaaccgtttcgttcttctcaatcttaaca |
324 |
Q |
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||||||||||||| ||||||||||||||||| |||||| |||| |||||||||| ||||||||||||||||||| | ||||||| ||||||||||||||| |
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| T |
26272582 |
gacataaacaacaagaacaccatcaagaaaatcagtataaaaaagctccttcatggtcaaccacttctcaccaatcatttcgtttttctcaatcttaaca |
26272483 |
T |
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| Q |
325 |
ctctcagcagcgagtttagcagcagctgaaacatcttca |
363 |
Q |
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| T |
26272482 |
ctctcagcagcgagtttagcagcagcagaaacatcttca |
26272444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 226 - 363
Target Start/End: Original strand, 43712279 - 43712417
Alignment:
| Q |
226 |
gacataaacaacatgaacaccatcaagaaaaccagtatcaa-aagctccttcatagtcaaccacttctcaccaaccgtttcgttcttctcaatcttaaca |
324 |
Q |
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||||||||||||| ||||||||||||||||| |||||| || |||| ||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
43712279 |
gacataaacaacaagaacaccatcaagaaaatcagtataaataagcaccttcatggtcaaccacttctcaccaaccatttcgtttttctcaatcttaaca |
43712378 |
T |
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| Q |
325 |
ctctcagcagcgagtttagcagcagctgaaacatcttca |
363 |
Q |
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||||||||| ||||||||||||||| |||||||||||| |
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| T |
43712379 |
gtctcagcagagagtttagcagcagcagaaacatcttca |
43712417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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