View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7042_high_6 (Length: 333)
Name: NF7042_high_6
Description: NF7042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7042_high_6 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 8535129 - 8534797
Alignment:
| Q |
1 |
tttagatgccaccactttcatctcctcccgcgctcatcacggccacatcgccttcattgacgcctccaccggccaccaattcacctaccaacaactctgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8535129 |
tttagatgccaccactttcatctcctcccgcgctcatcacggccatatcgccttcattgacgcctccaccggccaccaattcacttaccaacaactctgg |
8535030 |
T |
|
| Q |
101 |
cgatccgtcgactccgtcacctcctcactctccaacatgggtatccgtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8535029 |
cgatccgtcgactccgtcacctcctcactctccaacatgggtatccgtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttg |
8534930 |
T |
|
| Q |
201 |
tctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaatcctctcaatacatctggtgaaattgctaaacagatcgctgattccaaacctgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8534929 |
tctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaatcctctcaatacatctggtgaaattgctaaacagattgctgattccaaacctgt |
8534830 |
T |
|
| Q |
301 |
tcttgctttcactactcaacaactcctttccaa |
333 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
8534829 |
tcttgctttcactactcaacaactcctttccaa |
8534797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 8600368 - 8600036
Alignment:
| Q |
1 |
tttagatgccaccactttcatctcctcccgcgctcatcacggccacatcgccttcattgacgcctccaccggccaccaattcacctaccaacaactctgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8600368 |
tttagatgccaccactttcatctcctcccgcgctcatcacggccatatcgccttcattgacgcctccaccggccaccaattcacttaccaacaactctgg |
8600269 |
T |
|
| Q |
101 |
cgatccgtcgactccgtcacctcctcactctccaacatgggtatccgtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8600268 |
cgatccgtcgactccgtcacctcctcactctccaacatgggtatccgtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttg |
8600169 |
T |
|
| Q |
201 |
tctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaatcctctcaatacatctggtgaaattgctaaacagatcgctgattccaaacctgt |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8600168 |
tctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaatcctctcaatacatctggtgaaattgctaaacagattgctgattccaaacctgt |
8600069 |
T |
|
| Q |
301 |
tcttgctttcactactcaacaactcctttccaa |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
8600068 |
tcttgctttcactactcaacaactcctttccaa |
8600036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 8613058 - 8613390
Alignment:
| Q |
1 |
tttagatgccaccactttcatctcctcccgcgctcatcacggccacatcgccttcattgacgcctccaccggccaccaattcacctaccaacaactctgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8613058 |
tttagatgccaccactttcatctcctcccgcgctcatcacggccatatcgccttcattgacgcctccaccggccaccaattcacttaccaacaactctgg |
8613157 |
T |
|
| Q |
101 |
cgatccgtcgactccgtcacctcctcactctccaacatgggtatccgtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8613158 |
cgatccgtcgactccgtcacctcctcactctccaacatgggtatccgtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttg |
8613257 |
T |
|
| Q |
201 |
tctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaatcctctcaatacatctggtgaaattgctaaacagatcgctgattccaaacctgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8613258 |
tctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaatcctctcaatacatctggtgaaattgctaaacagattgctgattccaaacctgt |
8613357 |
T |
|
| Q |
301 |
tcttgctttcactactcaacaactcctttccaa |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
8613358 |
tcttgctttcactactcaacaactcctttccaa |
8613390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 8547819 - 8548141
Alignment:
| Q |
1 |
tttagatgccaccactttcatctcctcccgcgctcatcacggccacatcgccttcattgacgcctccaccggccaccaattcacctaccaacaactctgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8547819 |
tttagatgccaccactttcatctcctcccgcgctcatcacggccatatcgccttcattgacgcctccaccggccaccaattcacttaccaacaactctgg |
8547918 |
T |
|
| Q |
101 |
cgatccgtcgactccgtcacctcctcactctccaacatgggtatccgtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8547919 |
cgatccgtcgactccgtcacctcctcactctccaacatgggtatccgtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttg |
8548018 |
T |
|
| Q |
201 |
tctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaatcctctcaatacatctggtgaaattgctaaacagatcgctgattccaaacctgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8548019 |
tctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaatcctctcaatacatctggtgaaattgctaaacagattgctgattccaaacctgt |
8548118 |
T |
|
| Q |
301 |
tcttgctttcactactcaacaac |
323 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
8548119 |
tcttgctttcactactcaacaac |
8548141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 300
Target Start/End: Complemental strand, 14752799 - 14752501
Alignment:
| Q |
2 |
ttagatgccaccactttcatctcctcccgcgctcatcacggccacatcgccttcattgacgcctccaccggccaccaattcacctaccaacaactctggc |
101 |
Q |
| |
|
|||||||||||||| || |||||||||||||| ||||||||||||| || ||||| |||||||||||||||||||| || |||||||||||||| ||| |
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| T |
14752799 |
ttagatgccaccacctttatctcctcccgcgcccatcacggccacactgctttcatcgacgcctccaccggccaccactttacctaccaacaactttgga |
14752700 |
T |
|
| Q |
102 |
gatccgtcgactccgtcacctcctcactctccaacatgggtatccgtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttgt |
201 |
Q |
| |
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|| ||||||| | ||| ||||||| |||||||||||||| ||| || ||||| || ||||| ||||| ||||| |||||||| || |||||||| || |
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| T |
14752699 |
gagccgtcgatgctgtctcctcctctctctccaacatgggaatcaaaaagggtgatgttatcctcctcctttctcctaactccatttacttccctgtggt |
14752600 |
T |
|
| Q |
202 |
ctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaatcctctcaatacatctggtgaaattgctaaacagatcgctgattccaaacctgt |
300 |
Q |
| |
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|||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||| |||||| || || |||||||| |||||||||||||| |
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|
| T |
14752599 |
gtgtctcagtgtcatgtccctcggcgccatcatcaccaccaccaatcccctcaacacagtacatgaaatcgcgaagcagatcgcggattccaaacctgt |
14752501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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