View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7042_low_12 (Length: 323)
Name: NF7042_low_12
Description: NF7042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7042_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 50275834 - 50275538
Alignment:
| Q |
17 |
gattccgttcatccgaacttctcaaggtgattttgttcgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaat |
116 |
Q |
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| T |
50275834 |
gattccgttcatccgaacttctcaaggtgattttgtttgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaat |
50275735 |
T |
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| Q |
117 |
agaaatgatatttagaatgaataagcggttacatcaagactttat----agaggctaaaaacaaactaccactagtaattaactaacaaatatatacatt |
212 |
Q |
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| T |
50275734 |
agaaatgatatttagaatgaataagcgattacatcaagactttatttatagaggctaaaaacaaactaccactagtaattaactaacaaatatatacatt |
50275635 |
T |
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| Q |
213 |
ttgttaactcttacttctttctttgcatttgttttttcctcttgagattcagataattagaaaccacctcgaggcgttaacggatcagcaattgatg |
309 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275634 |
ttgttaactcttacttctttctttgcatttgtattttcctcttgagattcagataattagaaaccacctcgaggcgttaacggatcagcaattgatg |
50275538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 50279858 - 50279562
Alignment:
| Q |
17 |
gattccgttcatccgaacttctcaaggtgattttgttcgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279858 |
gattccgttcatccgaacttctcaaggtgattttgtttgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaat |
50279759 |
T |
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| Q |
117 |
agaaatgatatttagaatgaataagcggttacatcaagactttat----agaggctaaaaacaaactaccactagtaattaactaacaaatatatacatt |
212 |
Q |
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| T |
50279758 |
agaaatgatatttagaatgaataagcgattacatcaagactttatttatagaggctaaaaacaaactaccactagtaattaactaacaaatatatacatt |
50279659 |
T |
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| Q |
213 |
ttgttaactcttacttctttctttgcatttgttttttcctcttgagattcagataattagaaaccacctcgaggcgttaacggatcagcaattgatg |
309 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279658 |
ttgttaactcttacttctttctttgcatttgtattttcctcttgagattcagataattagaaaccacctcgaggcgttaacggatcagcaattgatg |
50279562 |
T |
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