View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7042_low_15 (Length: 266)
Name: NF7042_low_15
Description: NF7042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7042_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 3282104 - 3282323
Alignment:
| Q |
18 |
gacatctcttgaactacttgaactttcatattgttataggcttaagaaatttccagaaatattagtaaagatggaaaacatagtaggaattgatttggaa |
117 |
Q |
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| T |
3282104 |
gacatctcttgaactacttgaactttcatattgttataggcttaagaaatttccagaaatattagtaaagatggaaaacatagtaggaattgatttggaa |
3282203 |
T |
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| Q |
118 |
gaaacttccatagatgaattgccagattcatttcaaaatctcattgggattcaatacttaatactagatggacatggaatttttcttaggtttccatgta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3282204 |
gaaacttccatagatgaattgccagattcatttcaaaatctcattgggattcaatacttaatactagatggacatggaatttttcttaggtttccatgta |
3282303 |
T |
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| Q |
218 |
gcactctcatgatgccaaaa |
237 |
Q |
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|||||||||||||||||||| |
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| T |
3282304 |
gcactctcatgatgccaaaa |
3282323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 22 - 242
Target Start/End: Complemental strand, 28096221 - 28096001
Alignment:
| Q |
22 |
tctcttgaactacttgaactttcatattgttataggcttaagaaatttccagaaatattagtaaagatggaaaacatagtaggaattgatttggaagaaa |
121 |
Q |
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| T |
28096221 |
tctctggaactacttagactgtcatattgttataggcttaggaactttccagaaatattaggaaagatggaaaacctagaaagcatttttttgaaagaga |
28096122 |
T |
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| Q |
122 |
cttccatagatgaattgccagattcatttcaaaatctcattgggattcaatacttaatactagatggacatggaatttttcttaggtttccatgtagcac |
221 |
Q |
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| T |
28096121 |
catccataaaagaattgcctaattcatttcaaaatctcagcgggcttcgaaatttactcttagatggatttagaatgtttcttaggttaccaagtagcat |
28096022 |
T |
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| Q |
222 |
tctcatgatgccaaaaatgtc |
242 |
Q |
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|||| ||||||||||| |||| |
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| T |
28096021 |
tctcgtgatgccaaaattgtc |
28096001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 196
Target Start/End: Complemental strand, 26341216 - 26341059
Alignment:
| Q |
39 |
actttcatattgttataggcttaagaaatttccagaaatattagtaaagatggaaaacatagtaggaattgatttggaagaaacttccatagatgaattg |
138 |
Q |
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|||||||| ||||||||| |||||||| |||||||||||||||| ||||||||||||||| | | | ||| ||| ||||||||||| || |||||| |
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| T |
26341216 |
actttcattttgttatagtcttaagaactttccagaaatattaggaaagatggaaaacattggaagcatttctttaagtgaaacttccattgaagaattg |
26341117 |
T |
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| Q |
139 |
ccagattcatttcaaaatctcattgggattcaatacttaatactagatggacatggaa |
196 |
Q |
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| T |
26341116 |
cctgattcgtttcaaaatctcactggacttcattatttactactagaaggacatggaa |
26341059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 29828408 - 29828460
Alignment:
| Q |
40 |
ctttcatattgttataggcttaagaaatttccagaaatattagtaaagatgga |
92 |
Q |
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|||||||||||| |||| ||| ||| ||||||||||||||||| ||||||||| |
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| T |
29828408 |
ctttcatattgtaatagtcttgagagatttccagaaatattaggaaagatgga |
29828460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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