View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7042_low_17 (Length: 217)

Name: NF7042_low_17
Description: NF7042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7042_low_17
NF7042_low_17
[»] chr7 (17 HSPs)
chr7 (1-177)||(34626351-34626530)
chr7 (1-41)||(48735265-48735305)
chr7 (1-40)||(42495979-42496018)
chr7 (1-39)||(2541164-2541202)
chr7 (1-39)||(32758214-32758252)
chr7 (1-38)||(21172151-21172188)
chr7 (1-38)||(42798623-42798660)
chr7 (1-38)||(46354148-46354185)
chr7 (1-38)||(47077997-47078034)
chr7 (1-37)||(18326989-18327025)
chr7 (1-40)||(35334958-35334997)
chr7 (1-40)||(42805476-42805515)
chr7 (3-33)||(7794652-7794682)
chr7 (1-34)||(14732966-14732999)
chr7 (1-38)||(22699114-22699151)
chr7 (1-38)||(43557426-43557463)
chr7 (1-37)||(5180301-5180337)
[»] chr3 (18 HSPs)
chr3 (171-217)||(3446547-3446593)
chr3 (1-42)||(8247833-8247874)
chr3 (1-39)||(7697029-7697067)
chr3 (1-39)||(16735416-16735454)
chr3 (1-39)||(40272956-40272994)
chr3 (1-38)||(4495808-4495845)
chr3 (1-42)||(9276246-9276287)
chr3 (1-38)||(10870095-10870132)
chr3 (1-38)||(13730748-13730785)
chr3 (1-38)||(46421181-46421218)
chr3 (1-38)||(52926354-52926391)
chr3 (1-41)||(1217063-1217103)
chr3 (3-38)||(12914181-12914216)
chr3 (1-39)||(9607178-9607216)
chr3 (1-38)||(6411965-6412002)
chr3 (6-39)||(12525385-12525418)
chr3 (1-37)||(25517317-25517353)
chr3 (1-37)||(29366866-29366902)
[»] scaffold0057 (1 HSPs)
scaffold0057 (1-41)||(24911-24951)
[»] chr8 (18 HSPs)
chr8 (1-41)||(39461140-39461180)
chr8 (1-39)||(30454239-30454277)
chr8 (1-38)||(7136673-7136710)
chr8 (1-38)||(12670392-12670429)
chr8 (1-38)||(35261633-35261670)
chr8 (1-41)||(2626470-2626510)
chr8 (1-40)||(23286437-23286476)
chr8 (1-39)||(13160655-13160693)
chr8 (1-39)||(17823529-17823567)
chr8 (1-39)||(28817770-28817808)
chr8 (1-39)||(36720749-36720787)
chr8 (1-39)||(40605049-40605087)
chr8 (1-38)||(20869640-20869677)
chr8 (1-38)||(24245405-24245442)
chr8 (1-42)||(25250472-25250513)
chr8 (1-38)||(42840863-42840900)
chr8 (1-38)||(44530103-44530140)
chr8 (2-38)||(29521830-29521866)
[»] chr5 (12 HSPs)
chr5 (1-40)||(41014271-41014310)
chr5 (1-39)||(38879534-38879572)
chr5 (1-38)||(1565385-1565422)
chr5 (1-38)||(19438703-19438740)
chr5 (1-38)||(24448844-24448881)
chr5 (1-38)||(35710267-35710304)
chr5 (1-41)||(41956883-41956923)
chr5 (1-35)||(4619250-4619284)
chr5 (1-39)||(37024698-37024736)
chr5 (1-35)||(43334159-43334193)
chr5 (1-38)||(8170126-8170163)
chr5 (1-37)||(2838733-2838769)
[»] chr4 (21 HSPs)
chr4 (1-40)||(48598967-48599006)
chr4 (1-39)||(5648212-5648250)
chr4 (1-39)||(6430769-6430807)
chr4 (1-39)||(20224937-20224975)
chr4 (1-38)||(10660358-10660395)
chr4 (1-38)||(10874503-10874540)
chr4 (1-38)||(23501747-23501784)
chr4 (2-39)||(30639333-30639370)
chr4 (1-40)||(5306807-5306846)
chr4 (1-39)||(14590790-14590828)
chr4 (1-35)||(16911519-16911553)
chr4 (1-35)||(18969698-18969732)
chr4 (1-42)||(5313138-5313179)
chr4 (1-38)||(11054290-11054327)
chr4 (1-38)||(13256541-13256578)
chr4 (1-38)||(20405047-20405084)
chr4 (1-38)||(21646918-21646955)
chr4 (1-38)||(47528672-47528709)
chr4 (1-38)||(55766610-55766647)
chr4 (1-38)||(55830865-55830902)
chr4 (1-33)||(30352735-30352767)
[»] chr6 (6 HSPs)
chr6 (3-41)||(8409194-8409232)
chr6 (1-38)||(1346918-1346955)
chr6 (1-38)||(1354899-1354936)
chr6 (1-36)||(3815221-3815256)
chr6 (1-38)||(1941809-1941846)
chr6 (1-38)||(33922972-33923009)
[»] chr2 (15 HSPs)
chr2 (1-39)||(14530271-14530309)
chr2 (1-39)||(25079862-25079900)
chr2 (1-39)||(39189565-39189603)
chr2 (1-38)||(8455460-8455497)
chr2 (1-38)||(12024062-12024099)
chr2 (1-38)||(26684766-26684803)
chr2 (1-41)||(23397717-23397757)
chr2 (1-36)||(11514392-11514427)
chr2 (1-40)||(22371009-22371048)
chr2 (1-39)||(21779403-21779441)
chr2 (1-38)||(9671134-9671171)
chr2 (1-38)||(17705449-17705486)
chr2 (1-37)||(10543653-10543689)
chr2 (1-37)||(14544018-14544054)
chr2 (1-41)||(25249881-25249921)
[»] chr1 (19 HSPs)
chr1 (1-39)||(27474257-27474295)
chr1 (1-39)||(34714599-34714637)
chr1 (1-39)||(34725240-34725278)
chr1 (1-38)||(10668197-10668234)
chr1 (1-38)||(18944620-18944657)
chr1 (1-38)||(22930211-22930248)
chr1 (1-38)||(32632700-32632737)
chr1 (1-41)||(14617012-14617052)
chr1 (1-40)||(19932896-19932935)
chr1 (1-36)||(40424721-40424756)
chr1 (1-39)||(27201623-27201661)
chr1 (1-38)||(20004236-20004273)
chr1 (1-38)||(45812679-45812716)
chr1 (1-38)||(46248097-46248134)
chr1 (1-38)||(46991781-46991818)
chr1 (1-38)||(47214488-47214525)
chr1 (1-33)||(18742105-18742137)
chr1 (1-37)||(21723642-21723678)
chr1 (1-33)||(45402077-45402109)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-38)||(30533-30570)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-40)||(83827-83866)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-39)||(226550-226588)
[»] scaffold0258 (1 HSPs)
scaffold0258 (1-37)||(17513-17549)


Alignment Details
Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 34626351 - 34626530
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctcataacatct---aaacctgcaaaattcaatttggatgctacatggaaagnnnnnnnnnncag 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||          |||    
T  34626351 tgacaacaactttaccagttgcgctaaggttacccctcataacatcttctaaacctgcaaaattcaatttggatgctacatggaaagaaaaaaaaaacag 34626450  T
Q  98 ttggaatgaaaaggaccaattttcatagagcaatcaattatggaggggaaaagggcggtgggtggatgtctgtggagaaa 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34626451 ttggaatgaaaaggaccaattttcatagagcaatcaattatggaggggaaaagggcggtgggtggatgtctgtggagaaa 34626530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 48735265 - 48735305
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctcata 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  48735265 tgacaacaactttaccagttgcgccaaggttacccctcata 48735305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 42495979 - 42496018
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctcat 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  42495979 tgacaacaactttaccagttgcgccaaggttacccctcat 42496018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 2541164 - 2541202
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  2541164 tgacaacaactttaccagttgcgccaaggttacccctca 2541202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 32758252 - 32758214
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  32758252 tgacaacaactttaccagttgcgccaaggttacccctca 32758214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21172151 - 21172188
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  21172151 tgacaacaactttaccagttgcgccaaggttacccctc 21172188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 42798660 - 42798623
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  42798660 tgacaacaactttaccagttgcgccaaggttacccctc 42798623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 46354185 - 46354148
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  46354185 tgacaacaactttaccagttgcgccaaggttacccctc 46354148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 47077997 - 47078034
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  47077997 tgacaacaactttaccagttgcgccaaggttacccctc 47078034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18327025 - 18326989
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccct 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  18327025 tgacaacaactttaccagttgcgccaaggttacccct 18326989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 35334958 - 35334997
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctcat 40  Q
    |||||||||||||||||||||||| ||||||| |||||||    
T  35334958 tgacaacaactttaccagttgcgccaaggttatccctcat 35334997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 42805515 - 42805476
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctcat 40  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  42805515 tgacaacaactttaccagttacgccaaggttacccctcat 42805476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 33
Target Start/End: Original strand, 7794652 - 7794682
Alignment:
Q  3 acaacaactttaccagttgcgctaaggttac 33  Q
    |||||||||||||||||||||||||||||||    
T  7794652 acaacaactttaccagttgcgctaaggttac 7794682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 14732966 - 14732999
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacc 34  Q
    |||||||||||||||||||||||| |||||||||    
T  14732966 tgacaacaactttaccagttgcgccaaggttacc 14732999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22699114 - 22699151
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  22699114 tgacaacaactttaccagttgcgtcaaggttacccctc 22699151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43557463 - 43557426
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  43557463 tgacaacaactttaccagttgcggcaaggttacccctc 43557426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5180301 - 5180337
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccct 37  Q
    |||||||||||||||||||||||  ||||||||||||    
T  5180301 tgacaacaactttaccagttgcgtcaaggttacccct 5180337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 3446547 - 3446593
Alignment:
Q  171 ggagaaaacacccgaggacaatagaaaactaccaatactcctccatt 217  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  3446547 ggagaaaacacccgaggacaataaaaaactaccaatactcctccatt 3446593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8247833 - 8247874
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctcataa 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  8247833 tgacaacaactttaccagttgcgccaaggttacccctcataa 8247874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 7697029 - 7697067
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  7697029 tgacaacaactttaccagttgcgccaaggttacccctca 7697067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 16735454 - 16735416
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  16735454 tgacaacaactttaccagttgcgccaaggttacccctca 16735416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 40272956 - 40272994
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  40272956 tgacaacaactttaccagttgcgccaaggttacccctca 40272994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4495808 - 4495845
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  4495808 tgacaacaactttaccagttgcgcgaaggttacccctc 4495845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9276287 - 9276246
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctcataa 42  Q
    ||||||||||||||| |||||||| |||||||||||||||||    
T  9276287 tgacaacaactttactagttgcgccaaggttacccctcataa 9276246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10870095 - 10870132
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  10870095 tgacaacaactttaccagttgcgccaaggttacccctc 10870132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13730748 - 13730785
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  13730748 tgacaacaactttaccagttgcgccaaggttacccctc 13730785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 46421181 - 46421218
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  46421181 tgacaacaactttaccagttgcgccaaggttacccctc 46421218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 52926354 - 52926391
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  52926354 tgacaacaactttaccagttgcgccaaggttacccctc 52926391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 1217103 - 1217063
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctcata 41  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  1217103 tgactacaactttaccagttgcgccaaggttacccctcata 1217063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 12914181 - 12914216
Alignment:
Q  3 acaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||| |||||||||||||    
T  12914181 acaacaactttaccagttgcgccaaggttacccctc 12914216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 9607216 - 9607178
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  9607216 tgacaacaactttacaagttgcgccaaggttacccctca 9607178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6411965 - 6412002
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  6411965 tgacaacaactttaccagttgcgtcaaggttacccctc 6412002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 12525418 - 12525385
Alignment:
Q  6 acaactttaccagttgcgctaaggttacccctca 39  Q
    ||||||||||||||||||| ||||||||||||||    
T  12525418 acaactttaccagttgcgccaaggttacccctca 12525385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 25517317 - 25517353
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccct 37  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  25517317 tgacaacaactttaccagttgcgccaaggttatccct 25517353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29366866 - 29366902
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccct 37  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  29366866 tgacaacaactttaccagttacgccaaggttacccct 29366902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 24911 - 24951
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctcata 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  24911 tgacaacaactttaccagttgcgccaaggttacccctcata 24951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 39461140 - 39461180
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctcata 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  39461140 tgacaacaactttaccagttgcgccaaggttacccctcata 39461180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 30454239 - 30454277
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  30454239 tgacaacaactttaccagttgcgccaaggttacccctca 30454277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7136673 - 7136710
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  7136673 tgacaacaactttaccagttgcgccaaggttacccctc 7136710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12670392 - 12670429
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  12670392 tgacaacaactttaccagttgcgccaaggttacccctc 12670429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35261670 - 35261633
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  35261670 tgacaacaactttaccagttgcgccaaggttacccctc 35261633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 2626510 - 2626470
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctcata 41  Q
    ||||||||||||||||| |||||| ||||||||||||||||    
T  2626510 tgacaacaactttaccaattgcgccaaggttacccctcata 2626470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 23286437 - 23286476
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctcat 40  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  23286437 tgacaacaactttaccagttgcgacaaggttacccctcat 23286476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 13160693 - 13160655
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  13160693 tgacaacaactttaccagttgcgccgaggttacccctca 13160655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 17823567 - 17823529
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  17823567 tgacaacaactttaccagttgcgccaagattacccctca 17823529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 28817770 - 28817808
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    |||||||||||||||||||||| | ||||||||||||||    
T  28817770 tgacaacaactttaccagttgcaccaaggttacccctca 28817808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 36720787 - 36720749
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  36720787 tgacaacaactttaccagttacgccaaggttacccctca 36720749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 40605049 - 40605087
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    |||||||||||||||||||||||| || |||||||||||    
T  40605049 tgacaacaactttaccagttgcgccaaagttacccctca 40605087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20869640 - 20869677
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  20869640 tgacaacaactttaccagttgcgccaaggttatccctc 20869677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24245442 - 24245405
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||| | |||||||||||||    
T  24245442 tgacaacaactttaccagttgccccaaggttacccctc 24245405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25250513 - 25250472
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctcataa 42  Q
    ||||||||||||||||||||| || ||||||||| |||||||    
T  25250513 tgacaacaactttaccagttgtgccaaggttacctctcataa 25250472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 42840900 - 42840863
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  42840900 tgacaacaactttactagttgcgccaaggttacccctc 42840863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 44530140 - 44530103
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  44530140 tgacagcaactttaccagttgcgccaaggttacccctc 44530103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 29521830 - 29521866
Alignment:
Q  2 gacaacaactttaccagttgcgctaaggttacccctc 38  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  29521830 gacaacaactttatcagttgcgccaaggttacccctc 29521866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 41014310 - 41014271
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctcat 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  41014310 tgacaacaactttaccagttgcgccaaggttacccctcat 41014271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 38879572 - 38879534
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  38879572 tgacaacaactttaccagttgcgccaaggttacccctca 38879534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1565422 - 1565385
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  1565422 tgacaacaactttaccagttgcgccaaggttacccctc 1565385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19438740 - 19438703
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  19438740 tgacaacaactttaccagttgcgccaaggttacccctc 19438703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24448881 - 24448844
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  24448881 tgacaacaactttaccagttgcgccaaggttacccctc 24448844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35710304 - 35710267
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  35710304 tgacaacaactttaccagttgcgccaaggttacccctc 35710267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41956923 - 41956883
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctcata 41  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  41956923 tgacaacaactttaccagttgcgccaatgttacccctcata 41956883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4619250 - 4619284
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttaccc 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  4619250 tgacaacaactttaccagttgcgccaaggttaccc 4619284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 37024698 - 37024736
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    |||||||||||||||||||||| | ||||||||||||||    
T  37024698 tgacaacaactttaccagttgcaccaaggttacccctca 37024736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 43334193 - 43334159
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttaccc 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  43334193 tgacaacaactttaccagttgcgccaaggttaccc 43334159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8170126 - 8170163
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  8170126 tgacaacaactttaccagttgcgccaaggttagccctc 8170163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2838769 - 2838733
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccct 37  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  2838769 tgacaacaactttaccggttgcgccaaggttacccct 2838733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 48598967 - 48599006
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctcat 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  48598967 tgacaacaactttaccagttgcgccaaggttacccctcat 48599006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 5648250 - 5648212
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  5648250 tgacaacaactttaccagttgcgccaaggttacccctca 5648212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 6430769 - 6430807
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  6430769 tgacaacaactttaccagttgcgccaaggttacccctca 6430807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 20224975 - 20224937
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  20224975 tgacaacaactttaccagttgcgccaaggttacccctca 20224937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10660395 - 10660358
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  10660395 tgacaacaactttaccagttgcgccaaggttacccctc 10660358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10874540 - 10874503
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  10874540 tgacaacaactttaccagttgcgccaaggttacccctc 10874503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 23501784 - 23501747
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  23501784 tgacaacaactttaccagttgcgccaaggttacccctc 23501747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 30639370 - 30639333
Alignment:
Q  2 gacaacaactttaccagttgcgctaaggttacccctca 39  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  30639370 gacaacaactttaccagttgcgccaaggttacccctca 30639333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 5306807 - 5306846
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctcat 40  Q
    ||||| |||||||||||||||||| |||||||||||||||    
T  5306807 tgacatcaactttaccagttgcgccaaggttacccctcat 5306846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 14590828 - 14590790
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  14590828 tgacaacaactttaccagttgcgccaaggttaccactca 14590790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 16911553 - 16911519
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttaccc 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  16911553 tgacaacaactttaccagttgcgccaaggttaccc 16911519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 18969732 - 18969698
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttaccc 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  18969732 tgacaacaactttaccagttgcgccaaggttaccc 18969698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5313138 - 5313179
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctcataa 42  Q
    |||||||||||||||||||| ||| |||||||||| ||||||    
T  5313138 tgacaacaactttaccagttacgccaaggttacccgtcataa 5313179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 11054290 - 11054327
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  11054290 tgacaacaactttaccagttgcgccaaagttacccctc 11054327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13256541 - 13256578
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||| | |||||||||||||    
T  13256541 tgacaacaactttaccagttgcaccaaggttacccctc 13256578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 20405084 - 20405047
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  20405084 tgacaacaactttaccagttgcgtcaaggttacccctc 20405047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21646955 - 21646918
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  21646955 tgacaacaactttaccagttgcgccaaggttatccctc 21646918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 47528672 - 47528709
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||| | |||||||||||||    
T  47528672 tgacaacaactttaccagttgcaccaaggttacccctc 47528709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 55766610 - 55766647
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  55766610 tgacaacaactttaccagttgcgtcaaggttacccctc 55766647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 55830865 - 55830902
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  55830865 tgacaacaactttaccagttgcgtcaaggttacccctc 55830902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 30352735 - 30352767
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttac 33  Q
    |||||||||||||||||||||||| ||||||||    
T  30352735 tgacaacaactttaccagttgcgccaaggttac 30352767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 8409232 - 8409194
Alignment:
Q  3 acaacaactttaccagttgcgctaaggttacccctcata 41  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  8409232 acaacaactttaccagttgcgccaaggttacccctcata 8409194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1346955 - 1346918
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  1346955 tgacaacaactttaccagttgcgccaaggttacccctc 1346918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1354899 - 1354936
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  1354899 tgacaacaactttaccagttgcgccaaggttacccctc 1354936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 3815221 - 3815256
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccc 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  3815221 tgacaacaactttaccagttgcgccaaggttacccc 3815256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1941846 - 1941809
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||| | |||||||||||||    
T  1941846 tgacaacaactttaccagttgcaccaaggttacccctc 1941809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 33922972 - 33923009
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  33922972 tgacaacaactttaccggttgcgccaaggttacccctc 33923009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 14530309 - 14530271
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  14530309 tgacaacaactttaccagttgcgccaaggttacccctca 14530271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 25079862 - 25079900
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  25079862 tgacaacaactttaccagttgcgccaaggttacccctca 25079900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 39189565 - 39189603
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  39189565 tgacaacaactttaccagttgcgccaaggttacccctca 39189603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8455460 - 8455497
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  8455460 tgacaacaactttaccagttgcgccaaggttacccctc 8455497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12024062 - 12024099
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  12024062 tgacaacaactttaccagttgcgccaaggttacccctc 12024099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 26684766 - 26684803
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  26684766 tgacaacaactttaccagttgcgctaaagttacccctc 26684803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 23397757 - 23397717
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctcata 41  Q
    |||||||||||||||||||||| | ||||||||||||||||    
T  23397757 tgacaacaactttaccagttgcaccaaggttacccctcata 23397717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 11514427 - 11514392
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccc 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  11514427 tgacaacaactttaccagttgcgccaaggttacccc 11514392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 22371048 - 22371009
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctcat 40  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  22371048 tgacaacaactttaccagttgggccaaggttacccctcat 22371009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 21779403 - 21779441
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  21779403 tgacaacaacttcaccagttgcgccaaggttacccctca 21779441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9671171 - 9671134
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  9671171 tgacaacaactttaccggttgcgccaaggttacccctc 9671134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 17705486 - 17705449
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||| | |||||||||||||    
T  17705486 tgacaacaactttaccagttgcaccaaggttacccctc 17705449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 10543689 - 10543653
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccct 37  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  10543689 tgacaacaactttatcagttgcgccaaggttacccct 10543653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14544054 - 14544018
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccct 37  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  14544054 tgacaacaactttaccaattgcgccaaggttacccct 14544018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 25249881 - 25249921
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctcata 41  Q
    ||||||||||||||||| |||||| |||||||||| |||||    
T  25249881 tgacaacaactttaccaattgcgccaaggttacccatcata 25249921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 27474295 - 27474257
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  27474295 tgacaacaactttaccagttgagctaaggttacccctca 27474257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 34714637 - 34714599
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  34714637 tgacaacaactttaccagttgcgccaaggttacccctca 34714599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 34725240 - 34725278
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  34725240 tgacaacaactttaccagttgcgccaaggttacccctca 34725278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10668234 - 10668197
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  10668234 tgacaacaactttaccagttgcgccaaggttacccctc 10668197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18944657 - 18944620
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  18944657 tgacaacaactttaccagttgcgccaaggttacccctc 18944620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22930211 - 22930248
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  22930211 tgacaacaactttaccagttgcgccaaggttacccctc 22930248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 32632700 - 32632737
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  32632700 tgacaacaactttaccagttgcgccaaggttacccctc 32632737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 14617052 - 14617012
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctcata 41  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  14617052 tgacaacaactttaccggttgcgccaaggttacccctcata 14617012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 19932896 - 19932935
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctcat 40  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  19932896 tgacaacaactttaccagttgcgccaaggtaacccctcat 19932935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 40424756 - 40424721
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccc 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  40424756 tgacaacaactttaccagttgcgccaaggttacccc 40424721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 27201661 - 27201623
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  27201661 tgacaacaactttaccatttacgctaaggttacccctca 27201623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20004236 - 20004273
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||| | |||||||||||||    
T  20004236 tgacaacaactttaccagttgcaccaaggttacccctc 20004273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 45812679 - 45812716
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  45812679 tgacaacaactttatcagttgcgccaaggttacccctc 45812716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 46248097 - 46248134
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    ||||||||||||||||||||| || |||||||||||||    
T  46248097 tgacaacaactttaccagttgagccaaggttacccctc 46248134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 46991818 - 46991781
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||| | |||||||||||||    
T  46991818 tgacaacaactttaccagttgcaccaaggttacccctc 46991781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 47214525 - 47214488
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  47214525 tgacaacaactttaccagttgcgccaaagttacccctc 47214488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 18742105 - 18742137
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttac 33  Q
    |||||||||||||||||||||||| ||||||||    
T  18742105 tgacaacaactttaccagttgcgccaaggttac 18742137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 21723678 - 21723642
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccct 37  Q
    ||||||||||||||||||||| || ||||||||||||    
T  21723678 tgacaacaactttaccagttgtgcgaaggttacccct 21723642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 45402109 - 45402077
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttac 33  Q
    |||||||||||||||||||||||| ||||||||    
T  45402109 tgacaacaactttaccagttgcgccaaggttac 45402077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 30570 - 30533
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  30570 tgacaacaactttaccagttgcgccaaggttacccctc 30533  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 83866 - 83827
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctcat 40  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  83866 tgacaacaactttactagttgcgccaaggttacccctcat 83827  T

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Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 226550 - 226588
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccctca 39  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  226550 tgacaacaactttaccagttgcgccaaggttaccactca 226588  T

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Target: scaffold0258 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 17513 - 17549
Alignment:
Q  1 tgacaacaactttaccagttgcgctaaggttacccct 37  Q
    |||||||||||||| |||||||| |||||||||||||    
T  17513 tgacaacaactttagcagttgcgttaaggttacccct 17549  T

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