View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7042_low_2 (Length: 533)
Name: NF7042_low_2
Description: NF7042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7042_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 518
Target Start/End: Original strand, 11429430 - 11429926
Alignment:
| Q |
19 |
acttccctctttctcatatcacatgaatcatcacannnnnnnctctcgtattttatcaagttaggtctccagcaggcaaagggagaagaacaagnnnnnn |
118 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11429430 |
acttccctctttctcagatcacatgaatcatcacatttttt-ctctcgtattttattaagttaggtcttcagcaggcaaagggagaagaacaagaaaaaa |
11429528 |
T |
|
| Q |
119 |
nnnntatactatatacataatgattcatcaatttcatatttcacatacatttccaatccaaaaatcagttgcacaacttcaacgatattggaatgctgat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
11429529 |
aaaatatactatatacataatgattcatcaatttcatctttcacatacatttccaatcccaaaatcagttgaacaactttaacgatattggaatgctgat |
11429628 |
T |
|
| Q |
219 |
tctcatttattgtatatacttatttcctatagatacacatacagcattgttattccagcagaggataggatgtgttatagacacatcataaattgccctg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11429629 |
tctcatttattgtatatacttatttcctatagatacacatacagcattgttattccagcagaggataggatgtgt--tagacacatcataaattgccctg |
11429726 |
T |
|
| Q |
319 |
tgtgtatctccttcattttcttttatccgcac---gattataaatttcagtcgcacaatctttgacatcggcgaaaatttaccattaaatgcgaccaata |
415 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||| | ||||||| |||| ||| |
|
|
| T |
11429727 |
tgtgtatctccttcattttcttttatctgcactaagattataaatttcaatcgcacaatctttgacatcggcgaaaatttgcatttaaatgtgaccgata |
11429826 |
T |
|
| Q |
416 |
catccttgattgtgttattgattttgcgcgatagattagacaccaaatttcttgatgtcgcggcctagactgtgtttgcacacctttctcaaaaccttga |
515 |
Q |
| |
|
|| ||| |||||| || || ||||||| ||| |||| |||| | ||||||||| ||||||| | ||||||||| |||||| |||||||||||| |
|
|
| T |
11429827 |
caacctcaattgtg---ttcatattgcgcggtagcagtgacatcaaaatgcttgatgtcacggcctaaatggtgtttgcaaacctttttcaaaaccttga |
11429923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 11422305 - 11422380
Alignment:
| Q |
123 |
tatactatatacataatgattcatcaatttcatatttcacatacatttccaatccaaaaatcagttgcacaacttca |
199 |
Q |
| |
|
|||| ||||||||| || ||||||||||||||| ||| |||||||||| |||||| ||||||| || ||||||||| |
|
|
| T |
11422305 |
tatagtatatacatgat-attcatcaatttcatctttaacatacattttcaatcccaaaatcaattctacaacttca |
11422380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University