View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7042_low_3 (Length: 488)

Name: NF7042_low_3
Description: NF7042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7042_low_3
NF7042_low_3
[»] chr5 (2 HSPs)
chr5 (158-473)||(32928382-32928700)
chr5 (12-135)||(32928733-32928851)
[»] chr3 (1 HSPs)
chr3 (158-231)||(53247436-53247509)
[»] chr2 (1 HSPs)
chr2 (158-231)||(489416-489489)
[»] chr1 (2 HSPs)
chr1 (157-231)||(41612825-41612899)
chr1 (158-231)||(46750931-46751004)
[»] chr7 (1 HSPs)
chr7 (158-231)||(40448476-40448549)
[»] chr4 (3 HSPs)
chr4 (158-231)||(1483054-1483127)
chr4 (158-231)||(3222588-3222661)
chr4 (393-469)||(1483268-1483344)


Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 158 - 473
Target Start/End: Complemental strand, 32928700 - 32928382
Alignment:
Q  158 cgaccacagtgggagtcgaacccacgaccttctgatccgaagtcagacgcgctaatccactgcgctatgcggtcnnnnnnnctgttgttttctcgttttc 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||  |||||||||||||||    
T  32928700 cgaccacagtgggagtcgaacccacgaccttctgatccgaagtcagacgcgctaatccactgcgctatgcggtccttttttcttctgttttctcgttttc 32928601  T
Q  258 tgaatatatattttcttcatcgtagcgagcgagcgcgatcatgctgaaaaaatagaattattaatagattaaaatttacagttcaaggagggattcgaac 357  Q
    || ||||||||| | ||||||||||||||||||||||| ||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32928600 tgtatatatattgttttcatcgtagcgagcgagcgcgaacacactgaaaaaattgaattattaatagattaaaatttacagttcaaggagggattcgaac 32928501  T
Q  358 cctagtca---nnnnnnnnnnnnnnnnnatcacacaatacaacatgggtccaactccgttacagtcagcaatgctaatgggttcaccctgttttcctaac 454  Q
    ||||||||                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32928500 cctagtcatcttcttcttcttcttcttcttcacacaatacaacatgggtccaactccgttacagtcagcaatgctaatgggttcaccctgttttcctaac 32928401  T
Q  455 gccatttcttggtctgatg 473  Q
    |||||||||||||||||||    
T  32928400 gccatttcttggtctgatg 32928382  T

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Target: chr5; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 32928851 - 32928733
Alignment:
Q  12 gatggacatccacaaatacatatattcataacacaaatgttgataattttattttataaggatttaaacaaacatttaacctttattttaaaagcaaata 111  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||    
T  32928851 gatggacatccactgatacatatattcataacacaaatgttgataattttat-----aaggatttaaacaaacatttaacctttattttaaaagcaaata 32928757  T
Q  112 agtagattaatagttagattgtat 135  Q
    ||||||||||||||||||||||||    
T  32928756 agtagattaatagttagattgtat 32928733  T

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Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 53247509 - 53247436
Alignment:
Q  158 cgaccacagtgggagtcgaacccacgaccttctgatccgaagtcagacgcgctaatccactgcgctatgcggtc 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53247509 cgaccacagtgggagtcgaacccacgaccttctgatccgaagtcagacgcgctaatccactgcgctatgcggtc 53247436  T

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Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 489416 - 489489
Alignment:
Q  158 cgaccacagtgggagtcgaacccacgaccttctgatccgaagtcagacgcgctaatccactgcgctatgcggtc 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  489416 cgaccacagtgggagtcgaacccacgaccttctgatccgaagtcagacgcgctaatccactgcgctatgcggtc 489489  T

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Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 41612899 - 41612825
Alignment:
Q  157 acgaccacagtgggagtcgaacccacgaccttctgatccgaagtcagacgcgctaatccactgcgctatgcggtc 231  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  41612899 acgaccacagtgggagtcgaacccacgaccttttgatccgaagtcaaacgcgctaatccactgcgctatgcggtc 41612825  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 46751004 - 46750931
Alignment:
Q  158 cgaccacagtgggagtcgaacccacgaccttctgatccgaagtcagacgcgctaatccactgcgctatgcggtc 231  Q
    ||||||||||||||||| ||||||||||||| |||||| |||||| || | |||||| |||||  |||||||||    
T  46751004 cgaccacagtgggagtcaaacccacgaccttttgatccaaagtcaaacacactaatctactgcattatgcggtc 46750931  T

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Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 40448549 - 40448476
Alignment:
Q  158 cgaccacagtgggagtcgaacccacgaccttctgatccgaagtcagacgcgctaatccactgcgctatgcggtc 231  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  40448549 cgaccacagtgggagtcgaacccacgaccttttgatccgaagtcaaacgcgctaatccactgcgctatgcggtc 40448476  T

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Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 1483054 - 1483127
Alignment:
Q  158 cgaccacagtgggagtcgaacccacgaccttctgatccgaagtcagacgcgctaatccactgcgctatgcggtc 231  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1483054 cgaccacaatggtagtcgaacccacgaccttctgatccgaagtcagacgcgctaatccactgcgctatgcggtc 1483127  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 3222661 - 3222588
Alignment:
Q  158 cgaccacagtgggagtcgaacccacgaccttctgatccgaagtcagacgcgctaatccactgcgctatgcggtc 231  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  3222661 cgaccacagtgggagtcgaacccacgaccttttgatccgaagtcaaacgcgctaatccactgcgctatgcggtc 3222588  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 393 - 469
Target Start/End: Original strand, 1483268 - 1483344
Alignment:
Q  393 acaacatgggtccaactccgttacagtcagcaatgctaatgggttcaccctgttttcctaacgccatttcttggtct 469  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||  |||||||    
T  1483268 acaacatgggtccaactccgttacagtcagcgatgctaatgggttcaccttgttttccaaactccattgtttggtct 1483344  T

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