View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7043_high_1 (Length: 942)

Name: NF7043_high_1
Description: NF7043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7043_high_1
NF7043_high_1
[»] chr6 (19 HSPs)
chr6 (18-930)||(4369676-4370588)
chr6 (18-923)||(4365282-4366187)
chr6 (400-923)||(5725120-5725643)
chr6 (408-920)||(4360270-4360782)
chr6 (417-906)||(4414159-4414640)
chr6 (422-614)||(4389919-4390111)
chr6 (395-617)||(4377209-4377431)
chr6 (367-791)||(4384754-4385178)
chr6 (48-116)||(5725918-5725986)
chr6 (158-234)||(4360023-4360099)
chr6 (158-227)||(4414828-4414897)
chr6 (48-116)||(4389553-4389621)
chr6 (724-794)||(4390224-4390294)
chr6 (68-116)||(4376888-4376936)
chr6 (870-920)||(4385257-4385307)
chr6 (727-794)||(4377544-4377611)
chr6 (60-106)||(4359931-4359977)
chr6 (879-920)||(4377696-4377737)
chr6 (160-233)||(4384547-4384620)
[»] chr8 (1 HSPs)
chr8 (508-541)||(15658720-15658753)


Alignment Details
Target: chr6 (Bit Score: 901; Significance: 0; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 901; E-Value: 0
Query Start/End: Original strand, 18 - 930
Target Start/End: Original strand, 4369676 - 4370588
Alignment:
Q  18 ggttgagttgaccataagaagcaaattcagcagaggttttacacctttataacaaatcataacatatttccaaaactccttgtccaaaatcatatcctct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4369676 ggttgagttgaccataagaagcaaattcagcagaggttttacacctttataacaaatcataacatatttccaaaactccttgtccaaaatcatatcctct 4369775  T
Q  118 gcccatttcctagacttcggctctgcaaactcgtcggatgtggacttccattcctcggatgtgaacattcttaccaaagctcctttgttctcgtgaatac 217  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4369776 gcccatttcctagacttcggctctgcaaactcgttggatgtggacttccattcctcggaagtgaacattcttaccaaagctcctttgttctcgtgaatac 4369875  T
Q  218 aacataaagtaaagtatgatgtttcactttgatacatgcccacttttaaaatatcttttccttttgtgaaatgccgcattagagacttgacagaagggct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4369876 aacataaagtaaagtatgatgtttcactttgatacatgcccacttttaaaatatcttttccttttgtgaaatgccgcattagagacttgacagaagggct 4369975  T
Q  318 tatataaataaaggctataagatcttgacatttcttagttatctctgagtgaataggtatattcgtctcacagtctgccaaaatcatctgaatgcaattt 417  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4369976 tacataaataaaggctataagatcttgacatttcttagttatctctgagtgaataggtatattcgtctcacagtctgccaaaatcatctgaatgcaattt 4370075  T
Q  418 gttgcacaaggggtccaatacagcctagttcttttctccatcaacatctcaccaacagctctgcagaatggtgtattgtccgtcacaatttggacaacat 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4370076 gttgcacaaggggtccaatacagcctagttcttttctccatcaacatctcaccaacagctctgcagaatggtgtattgtccgtcacaatttggacaacat 4370175  T
Q  518 tttcttctccaacctcttcaacaatgttgtccaaaatccgaaagagtttgtcaggcgattccaacatatcagttgcatcaatagacttcaaaaagaatgt 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4370176 tttcttctccaacctcttcaacaatgttgtccaaaatccgaaagagtttgtcaggcgattccaacatatcagttgcatcaatagacttcaaaaagaatgt 4370275  T
Q  618 tccgtttggactgttcactaacaagtttattatggtcctactctctgcgtcaaccgatccatcaaccattatggtgcaacctgttaccttccacatagct 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4370276 tccgtttggactgttcactaacaagtttattatggtcctactctctgcgtcaaccgatccatcaaccattatggtgcaacctgttaccttccacatagct 4370375  T
Q  718 ctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacggtggcttaaatccttcgccttgtc 817  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4370376 ctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacggtggcttaaatccttcgccttgtc 4370475  T
Q  818 ttgaaaccaaatcaaacatagttttaaattcatcactctgtgccgctgcaaacggtatggcattgttgtagaaaaaccttgcaatcgcttgacatgcttc 917  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4370476 ttgaaaccaaatcaaacatagttttaaattcatcactctgtgccgctgcaaacggtatggcattgttgtagaaaaaccttgcaatcgcttgacatgcttc 4370575  T
Q  918 ctctcttgatgtc 930  Q
    |||||||||||||    
T  4370576 ctctcttgatgtc 4370588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 18 - 923
Target Start/End: Original strand, 4365282 - 4366187
Alignment:
Q  18 ggttgagttgaccataagaagcaaattcagcagaggttttacacctttataacaaatcataacatatttccaaaactccttgtccaaaatcatatcctct 117  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4365282 ggttgaatcgaccataagaagcaaattcagcagaggttttacacctttataacaaatcataacatatttccaaaactccttgtccaaaatcatatcctct 4365381  T
Q  118 gcccatttcctagacttcggctctgcaaactcgtcggatgtggacttccattcctcggatgtgaacattcttaccaaagctcctttgttctcgtgaatac 217  Q
    ||||||||||||||| | |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4365382 gcccatttcctagaccttggctctgcaaactcgc------tggacttccattcctcggatgtgaacattcttaccaaagctcctttgttctcgtgaatac 4365475  T
Q  218 aacataaagtaaagtatgatgtttcactttgatacatgcccacttttaaaatatcttttccttttgtgaaatgccgcattagagacttgacagaagggct 317  Q
    ||||||||||| ||||||||||||  | |||||||||||||| ||||||||||||||||||||||||||| |||| || |||||||||||||||||| ||    
T  4365476 aacataaagtatagtatgatgtttgccattgatacatgcccaattttaaaatatcttttccttttgtgaagtgccacaatagagacttgacagaaggcct 4365575  T
Q  318 tatataaataaaggctataagatcttgacatttcttagttatctctgagtgaataggtatattcgtctcacagtctgccaaaatcatctgaatgcaattt 417  Q
    | ||| |||||||| |||||||   ||||| |||||| ||||||||||||||||||||||||||  |||||||||| |||| ||| || ||||||||| |    
T  4365576 tgtatgaataaaggttataagactctgacacttcttaattatctctgagtgaataggtatattctcctcacagtcttccaatatcgtcagaatgcaatct 4365675  T
Q  418 gttgcacaaggggtccaatacagcctagttcttttctccatcaacatctcaccaacagctctgcagaatggtgtattgtccgtcacaatttggacaacat 517  Q
    ||||||||||||||||||||||||||||| |||||| |||||| ||||  | |  | |||  | || ||  |||||  ||||||||||| |||||| |||    
T  4365676 gttgcacaaggggtccaatacagcctagtccttttcgccatcagcatcatagcggctgctgcgtagtattctgtatattccgtcacaatgtggacagcat 4365775  T
Q  518 tttcttctccaacctcttcaacaatgttgtccaaaatccgaaagagtttgtcaggcgattccaacatatcagttgcatcaatagacttcaaaaagaatgt 617  Q
    ||||||| |||||||||||||||| ||  ||||  |||  ||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  4365776 tttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttctcaggcgattccaacatatcagacgcatcaatagacttcaaaaagaatgt 4365875  T
Q  618 tccgtttggactgttcactaacaagtttattatggtcctactctctgcgtcaa------ccgatccatcaaccattatggtgcaacctgttaccttccac 711  Q
    ||| |||||||||||||||||| |||||| ||||||||||||||| | ||||       |||||||||||||||||||||||||||||||||| |||||     
T  4365876 tccctttggactgttcactaaccagtttagtatggtcctactctccgtgtcactgtcagccgatccatcaaccattatggtgcaacctgttactttccat 4365975  T
Q  712 atagctctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacggtggcttaaatccttcgc 811  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  4365976 atagctctatgttcctccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacggtggattaaatcctacgc 4366075  T
Q  812 cttgtcttgaaaccaaatcaaacatagttttaaattcatcactctgtgccgctgcaaacggtatggcattgttgtagaaaaaccttgcaatcgcttgaca 911  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  4366076 cttgtcttgaaaccaaatcaaacatagttttaaattcatcactctttgccgctgtaaacggtatggcattgttgtagaaaaaccttgcaatcacttgaca 4366175  T
Q  912 tgcttcctctct 923  Q
    ||||||||||||    
T  4366176 tgcttcctctct 4366187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 157; E-Value: 6e-83
Query Start/End: Original strand, 400 - 923
Target Start/End: Complemental strand, 5725643 - 5725120
Alignment:
Q  400 atcatctgaatgcaatttgttgcacaaggggtccaatacagcctagttcttttctccatcaacatctcaccaacagctctgcagaatggtgtattgtccg 499  Q
    ||||||| ||||||   |||||||||||| |||||||||| |||||| ||||||| |||||||||||||||| |   |    || ||| || | ||||||    
T  5725643 atcatctcaatgcaccgtgttgcacaaggtgtccaatacaacctagtccttttcttcatcaacatctcaccagccttttcatagtatgttgcactgtccg 5725544  T
Q  500 tcacaatttggacaacattttcttctccaacctcttcaacaatgttgtccaaaatccgaaagagtttgtcaggcgattccaac--atatcagttgcatca 597  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||  ||||  |||  ||| ||||  ||||| ||     ||  ||||||| ||  |||    
T  5725543 tcacaatttggacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaatagttcttcaggtga-----acttatatcagctgattca 5725449  T
Q  598 atagacttcaaaaagaatgttccgtttggactgttcactaacaagtttattatggtccta--ctc--tctgcgtcaaccgatccatcaaccattatggtg 693  Q
    | ||||||||||||||||||||| ||||||||||| || || ||||||| ||||  ||||  |||  ||| | |||  | |  |||| ||||||||||||    
T  5725448 acagacttcaaaaagaatgttccctttggactgtttacgaagaagtttagtatgtccctaaactccttct-catcataccagtcatcgaccattatggtg 5725350  T
Q  694 caacctgttaccttccacatagctctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacg 793  Q
    |||||||||| |||||||| ||||||||||||| ||||||||||  |||| |||| ||||||||||||||||||||||||| ||||||||||  ||||||    
T  5725349 caacctgttatcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttccctttaatctcatcgaaagacg 5725250  T
Q  794 gtggcttaaatccttcgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactctgtgccgctgcaaacggtatggcattgttgtagaaaaa 893  Q
    |||||||||| ||| | || ||| ||||||||| |||| |||||||  ||||||||||||||| | ||||  ||| | ||||| ||||||||||||||||    
T  5725249 gtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataaattcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaa 5725150  T
Q  894 ccttgcaatcgcttgacatgcttcctctct 923  Q
    ||||||||| |||||||||||||| |||||    
T  5725149 ccttgcaatagcttgacatgcttcttctct 5725120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 408 - 920
Target Start/End: Original strand, 4360270 - 4360782
Alignment:
Q  408 aatgcaatttgttgcacaaggggtccaatacagcctagttcttttctccatcaacatctcaccaacagctctgcagaatggtgtattgtccgtcacaatt 507  Q
    |||||||| |||||| ||||| ||||||||||||||||| |||||| ||||||||||| || |  |||||    || |||||||||  ||||| ||||      
T  4360270 aatgcaatgtgttgcgcaaggtgtccaatacagcctagtccttttcgccatcaacatcccagcggcagctacatagtatggtgtatattccgttacaacg 4360369  T
Q  508 tggacaacattttcttctccaacctcttcaacaatgttgtccaaaatccgaaagagtttgtcaggcgattccaacatatcagttgcatcaatagacttca 607  Q
    ||||||||||||||||| |||||||||||||||| ||  ||||  ||   ||||||||| |||| |||||||||||||||||  |||||||||| |||||    
T  4360370 tggacaacattttcttccccaacctcttcaacaacgtcatccatcattttaaagagtttctcagacgattccaacatatcagacgcatcaatagtcttca 4360469  T
Q  608 aaaagaatgttccgtttggactgttcactaacaagtttattatggtcctactctctgcgtcaaccgatccatcaaccattatggtgcaacctgttacctt 707  Q
    ||||||||||||| ||||||||||||| ||||||||||| |||| ||||  |      || |    || |||| ||||||||| |||||||||| | |||    
T  4360470 aaaagaatgttccctttggactgttcagtaacaagtttagtatgttcctcttgggaaagttagtaaatacatcgaccattatgctgcaacctgtgatctt 4360569  T
Q  708 ccacatagctctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacggtggcttaaatcct 807  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| ||| ||||  |||||||||| || ||| |||    |   ||||||||||||||||    
T  4360570 ccacatagctctatgttcttccaaaacttcattcgtcaacttaatttcttccggaaaatatttccatccaatatcaaagaaccccggtggcttaaatcct 4360669  T
Q  808 tcgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactctgtgccgctgcaaacggtatggcattgttgtagaaaaaccttgcaatcgctt 907  Q
     |||| |||||||||||||||||| |||| || |||||||||||||| | | |   | | || ||||||||||||||  ||||||||||||||| ||||     
T  4360670 acgccatgtcttgaaaccaaatcacacattgtcttaaattcatcactttctactatttcgaagggtatggcattgttcaagaaaaaccttgcaaccgctc 4360769  T
Q  908 gacatgcttcctc 920  Q
    ||||||| |||||    
T  4360770 gacatgcctcctc 4360782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 417 - 906
Target Start/End: Complemental strand, 4414640 - 4414159
Alignment:
Q  417 tgttgcacaaggggtccaatacagcctagttcttttctccatcaacatctcaccaacagctctgcagaatggtgtattgtccgtcacaatttggacaaca 516  Q
    |||||||||||| |||||||||| |||||| |||||| ||||| ||||||||||| || || || || | | ||||||||| ||||||||||||||||||    
T  4414640 tgttgcacaaggtgtccaatacaacctagtccttttcaccatctacatctcaccagcaactttgtagtaggttgtattgtctgtcacaatttggacaaca 4414541  T
Q  517 ttttcttctccaacctcttcaacaatgttgtccaaaatccgaaagagtttgtcaggcgattccaacatatcagttgcatcaatagacttcaaaaagaatg 616  Q
    |||||||| ||||||||||| ||||| |  ||||  |||  ||||||||||| ||| |||||||||||||  |  |||||||  ||||||||||||||||    
T  4414540 ttttcttc-ccaacctcttctacaatttcatccatcatcttaaagagtttgttaggtgattccaacatattcgacgcatcaacggacttcaaaaagaatg 4414442  T
Q  617 ttccgtttggactgttcactaacaagtttattatggtcctactctctgcgtcaaccgatccatcaaccattatggtgcaacctgttaccttccacatagc 716  Q
    |||  |   |  | |||||||| |  |||| |||| ||||  ||| || |||   | |||||||||||||||| ||| | |||      ||||| |||||    
T  4414441 ttc--tcctggttattcactaagatatttagtatgttcctcttctttgggtcggtccatccatcaaccattatagtgtaccct------ttccatatagc 4414350  T
Q  717 tctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccc-tctaatctcatcataagacggtggcttaaatccttcgccttg 815  Q
    |||||||||| |||||||||| ||||||||||||||||| |||| |||||||||||| | |||  |||||| |||| ||||||  |||||||   || ||    
T  4414349 tctatgttctaccaaagcttcctttgtcaacttaacttcttccgccaaatatttcccttttaaggtcatcaaaagaaggtggcacaaatcctaacccatg 4414250  T
Q  816 tcttgaaaccaaatcaaacatagttttaaattcatcactctgtgccgctgcaaacggtatggcattgttgtagaaaaaccttgcaatcgct 906  Q
    |||||||||||| | | |||||||  |||| |||||||||| | ||||  ||| ||||||| |||||||||||||||||||||||| ||||    
T  4414249 tcttgaaaccaactgacacatagtaataaactcatcactctttaccgcatcaagcggtatgtcattgttgtagaaaaaccttgcaaccgct 4414159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 422 - 614
Target Start/End: Original strand, 4389919 - 4390111
Alignment:
Q  422 cacaaggggtccaatacagcctagttcttttctccatcaacatctcaccaacagctctgcagaatggtgtattgtccgtcacaatttggacaacattttc 521  Q
    ||||||| |||||||||| |||||| || ||||||||||||||||||||| |||||||| |  |||  ||||| |||||||||| ||| |||||||||||    
T  4389919 cacaaggtgtccaatacaacctagtcctcttctccatcaacatctcaccagcagctctgaaatatgccgtattatccgtcacaacttgaacaacattttc 4390018  T
Q  522 ttctccaacctcttcaacaatgttgtccaaaatccgaaagagtttgtcaggcgattccaacatatcagttgcatcaatagacttcaaaaagaa 614  Q
    ||| ||||||||||||||||  |  ||||  |||  ||| | ||| |||| ||||||||||||||| |  |||||||  ||||||||||||||    
T  4390019 ttcaccaacctcttcaacaacatcatccatcatcttaaacaatttctcagacgattccaacatatcggacgcatcaaccgacttcaaaaagaa 4390111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 395 - 617
Target Start/End: Original strand, 4377209 - 4377431
Alignment:
Q  395 ccaaaatcatctgaatgcaatttgttgcacaaggggtccaatacagcctagttcttttctccatcaacatctcaccaacagctctgcagaatggtgtatt 494  Q
    |||| ||||||| |||||| | ||| |||||||| |||||||||| |||||| || ||||||||||||||||||||| ||||| || |  | |  |||||    
T  4377209 ccaacatcatctcaatgcagtgtgtcgcacaaggtgtccaatacaacctagtcctcttctccatcaacatctcaccagcagctttgaaataagtcgtatt 4377308  T
Q  495 gtccgtcacaatttggacaacattttcttctccaacctcttcaacaatgttgtccaaaatccgaaagagtttgtcaggcgattccaacatatcagttgca 594  Q
     ||||| |||| ||| |||||||||||||| ||||||||||||||||  |  ||||  |||  ||| | ||| ||||||||||||| |||||| |  |||    
T  4377309 atccgttacaacttgaacaacattttcttccccaacctcttcaacaacatcatccatcatcttaaacaatttctcaggcgattccatcatatctgacgca 4377408  T
Q  595 tcaatagacttcaaaaagaatgt 617  Q
    ||||  |||||||||||||||||    
T  4377409 tcaaccgacttcaaaaagaatgt 4377431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 367 - 791
Target Start/End: Original strand, 4384754 - 4385178
Alignment:
Q  367 tgaataggtatattcgtctcacagtctgccaaaatcatctgaatgcaatttgttgcacaaggggtccaatacagcctagttcttttctccatcaacatct 466  Q
    |||| |||||| ||| ||||| | ||| |||| ||| ||| |||||| | ||| |||||||| |||||||||| |||||| || ||||||||||||||||    
T  4384754 tgaacaggtatcttcttctcataatcttccaacatcctctcaatgcagtgtgtcgcacaaggtgtccaatacaacctagtcctcttctccatcaacatct 4384853  T
Q  467 caccaacagctctgcagaatggtgtattgtccgtcacaatttggacaacattttcttctccaacctcttcaacaatgttgtccaaaatccgaaagagttt 566  Q
    ||||| ||||| || |  | |  ||||| ||||| |||| ||| |||||||||||||| ||||||||||||||||  |  ||||  |||  ||| | |||    
T  4384854 caccagcagctttgaaataagccgtattatccgtgacaacttgaacaacattttcttccccaacctcttcaacaacatcatccatcatcttaaacaattt 4384953  T
Q  567 gtcaggcgattccaacatatcagttgcatcaatagacttcaaaaagaatgttccgtttggactgttcactaacaagtttattatggtcctactctctgcg 666  Q
     |||| ||||||||||||||| |  |||||||  ||||| |||||||| || || ||   ||| ||||| |||||||| | |||  ||||  |||    |    
T  4384954 ctcagacgattccaacatatctgacgcatcaaccgactttaaaaagaacgtcccattcacactattcaccaacaagttcaatatactcctcttcttcttg 4385053  T
Q  667 tcaaccgatccatcaaccattatggtgcaacctgttaccttccacatagctctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaat 766  Q
    |||  | |||||||||||||||     || || |||  ||||||   | ||||||| ||||||||||||| |||   |||||||||||| ||| ||||||    
T  4385054 tcagtccatccatcaaccattacacaacaccccgttttcttccattgaactctatgatcttccaaagctttattcaccaacttaacttcttccctcaaat 4385153  T
Q  767 atttccctctaatctcatcataaga 791  Q
    | |||||||||||||||||| ||||    
T  4385154 acttccctctaatctcatcaaaaga 4385178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 5725986 - 5725918
Alignment:
Q  48 cagaggttttacacctttataacaaatcataacatatttccaaaactccttgtccaaaatcatatcctc 116  Q
    |||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||    
T  5725986 cagaggatttgcacctttataacaaatcataacatctttccaaaactccttgtccaaaaccaaatcctc 5725918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 4360023 - 4360099
Alignment:
Q  158 tggacttccattcctcggatgtgaacattcttaccaaagctcctttgttctcgtgaatacaacataaagtaaagtat 234  Q
    |||||||||| |||| |||| |||||||||||  |||||||||||||||||| |||| |||||||||||| ||||||    
T  4360023 tggacttccactccttggatttgaacattcttctcaaagctcctttgttctcatgaagacaacataaagttaagtat 4360099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 4414897 - 4414828
Alignment:
Q  158 tggacttccattcctcggatgtgaacattcttaccaaagctcctttgttctcgtgaatacaacataaagt 227  Q
    |||||||||| |||| ||||||||||||||||  ||||||||||| |||||| |||||||||| ||||||    
T  4414897 tggacttccactccttggatgtgaacattcttctcaaagctccttcgttctcatgaatacaacctaaagt 4414828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 4389553 - 4389621
Alignment:
Q  48 cagaggttttacacctttataacaaatcataacatatttccaaaactccttgtccaaaatcatatcctc 116  Q
    |||||| ||| |||||||  ||||||||||||||| ||||||||||||||||||||||| || ||||||    
T  4389553 cagaggatttgcacctttcaaacaaatcataacatttttccaaaactccttgtccaaaaccacatcctc 4389621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 724 - 794
Target Start/End: Original strand, 4390224 - 4390294
Alignment:
Q  724 tcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacgg 794  Q
    |||||||||||||||||   |||||||||||| ||| ||||||| |||||| ||||||||||| |||||||    
T  4390224 tcttccaaagcttcattcaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagacgg 4390294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 4376888 - 4376936
Alignment:
Q  68 aacaaatcataacatatttccaaaactccttgtccaaaatcatatcctc 116  Q
    ||||||||||||||| ||||||||||||||||||||||| || ||||||    
T  4376888 aacaaatcataacatttttccaaaactccttgtccaaaaccacatcctc 4376936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 870 - 920
Target Start/End: Original strand, 4385257 - 4385307
Alignment:
Q  870 cggtatggcattgttgtagaaaaaccttgcaatcgcttgacatgcttcctc 920  Q
    |||||| |||||||||||||||||||| ||||||||| |||| ||||||||    
T  4385257 cggtattgcattgttgtagaaaaacctcgcaatcgctcgacacgcttcctc 4385307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 794
Target Start/End: Original strand, 4377544 - 4377611
Alignment:
Q  727 tccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacgg 794  Q
    |||||||||| |||   |||||||||||| ||| ||||||| |||||| ||||||||||| |||||||    
T  4377544 tccaaagctttattgaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagacgg 4377611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 4359931 - 4359977
Alignment:
Q  60 acctttataacaaatcataacatatttccaaaactccttgtccaaaa 106  Q
    ||||||||||||||||||||||| |||||||||| | |||| |||||    
T  4359931 acctttataacaaatcataacatttttccaaaaccctttgttcaaaa 4359977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 879 - 920
Target Start/End: Original strand, 4377696 - 4377737
Alignment:
Q  879 attgttgtagaaaaaccttgcaatcgcttgacatgcttcctc 920  Q
    |||||||||||||||||| ||||||||| |||| ||||||||    
T  4377696 attgttgtagaaaaacctcgcaatcgctcgacacgcttcctc 4377737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 4384547 - 4384620
Alignment:
Q  160 gacttccattcctcggatgtgaacattcttaccaaagctcctttgttctcgtgaatacaacataaagtaaagta 233  Q
    ||||||||| ||||||||||||||||| ||  ||||||||| ||| |||| |||| |||  ||||||| |||||    
T  4384547 gacttccatgcctcggatgtgaacattgttctcaaagctcccttggtctcatgaagacagtataaagttaagta 4384620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 508 - 541
Target Start/End: Complemental strand, 15658753 - 15658720
Alignment:
Q  508 tggacaacattttcttctccaacctcttcaacaa 541  Q
    |||||||||||||||||||||| |||||||||||    
T  15658753 tggacaacattttcttctccaatctcttcaacaa 15658720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University