View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7043_high_10 (Length: 443)
Name: NF7043_high_10
Description: NF7043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7043_high_10 |
 | |
|
| [»] scaffold0511 (3 HSPs) |
| | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0230 (2 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
| [»] scaffold0133 (2 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 115; Significance: 3e-58; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 194 - 432
Target Start/End: Complemental strand, 18808700 - 18808462
Alignment:
| Q |
194 |
tacataaagagcacgatgaaataagcaagggattgagaagattactaaagtatattttttctgtagttaactccaatgaaggaacgtgagctatcttctg |
293 |
Q |
| |
|
|||||||||| || |||||||||||||||||||| || | ||||||| ||||| | | | |||| ||||||||||| |||||||||||||||||| || |
|
|
| T |
18808700 |
tacataaagaacaagatgaaataagcaagggattcagtatattactatagtatgtgtatattgtaattaactccaattcaggaacgtgagctatcttttg |
18808601 |
T |
|
| Q |
294 |
ccaatcttccccggtacctttcttgcatcgtttctccaacataggacatctaacaataagcaatgcgtgcaagtttttgaggttctgaaagctatttggt |
393 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||| |||||||| ||||||| ||||| ||||||||| ||||||| ||||||||||||||| |
|
|
| T |
18808600 |
ccaatcttccccagttcctttcttgcatcgtttctccaacttaggacattcaacaatagacaatgtatgcaagtttatgaggttttgaaagctatttggt |
18808501 |
T |
|
| Q |
394 |
agcgaccttacagtagaacacgaaatgatttctattctt |
432 |
Q |
| |
|
|||||| ||||| | | ||||||||||||||||| |||| |
|
|
| T |
18808500 |
agcgactttacatttgtacacgaaatgatttctactctt |
18808462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 194 - 432
Target Start/End: Complemental strand, 18875700 - 18875462
Alignment:
| Q |
194 |
tacataaagagcacgatgaaataagcaagggattgagaagattactaaagtatattttttctgtagttaactccaatgaaggaacgtgagctatcttctg |
293 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| || | ||||||| ||||| | | ||||| | ||||||||||| |||||||||||||||||| || |
|
|
| T |
18875700 |
tacataaagacaaagatgaaataagcaagggattcagtatattactatagtatgtgtcttctgcaattaactccaattcaggaacgtgagctatcttttg |
18875601 |
T |
|
| Q |
294 |
ccaatcttccccggtacctttcttgcatcgtttctccaacataggacatctaacaataagcaatgcgtgcaagtttttgaggttctgaaagctatttggt |
393 |
Q |
| |
|
|||||||| ||| || |||||||||||||||||| ||||||||| ||||| || ||||||||| | ||||||||| ||||||| |||||||| |||||| |
|
|
| T |
18875600 |
ccaatctttcccagttcctttcttgcatcgtttcaccaacatagaacatcgaaaaataagcaacgtatgcaagtttatgaggttttgaaagctgtttggt |
18875501 |
T |
|
| Q |
394 |
agcgaccttacagtagaacacgaaatgatttctattctt |
432 |
Q |
| |
|
|||||| ||| | | | ||| |||||||||||| |||| |
|
|
| T |
18875500 |
agcgactttaaatttggacaaaaaatgatttctactctt |
18875462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 18875932 - 18875862
Alignment:
| Q |
44 |
acgcactgcattaagagttccaatatgtcagaaatcatcatacatttgagagaaaaacaagatctatgaag |
114 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18875932 |
acgcactgcatcaagagtttcaatatgtcagaaatcatcatacatttgggagaaaaacaagatctatgaag |
18875862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 18790739 - 18790665
Alignment:
| Q |
40 |
aatcacgcactgcattaagagttccaatatgtcagaaatcatcatacatttgagagaaaaacaagatctatgaag |
114 |
Q |
| |
|
|||||||| ||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18790739 |
aatcacgccctgcaccaagcgttccaatatgtcagaaatcatcatacatttgggagaaaaacaagatctatgaag |
18790665 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 18808929 - 18808862
Alignment:
| Q |
31 |
aatttggataatcacgcactgcattaagagttccaatatgtcagaaatcatcatacatttgagagaaa |
98 |
Q |
| |
|
||||| || |||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
18808929 |
aatttcgaaaatcacgcgctgcattaagagttccaatatgtcagaaataatcatacatttgggagaaa |
18808862 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 16836439 - 16836489
Alignment:
| Q |
273 |
aggaacgtgagctatcttctgccaatcttccccggtacctttcttgcatcg |
323 |
Q |
| |
|
||||| |||||||||||| |||||||||||||| || ||||||||||||| |
|
|
| T |
16836439 |
aggaatgtgagctatcttgtgccaatcttcccctgtttctttcttgcatcg |
16836489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 16841550 - 16841600
Alignment:
| Q |
273 |
aggaacgtgagctatcttctgccaatcttccccggtacctttcttgcatcg |
323 |
Q |
| |
|
||||| |||||||||||| |||||||||||||| || ||||||||||||| |
|
|
| T |
16841550 |
aggaatgtgagctatcttatgccaatcttcccctgtttctttcttgcatcg |
16841600 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 374
Target Start/End: Complemental strand, 17065412 - 17065322
Alignment:
| Q |
284 |
ctatcttctgccaatcttccccggtacctttcttgcatcgtttctccaacataggacatctaacaataagcaatgcgtgcaagtttttgag |
374 |
Q |
| |
|
||||||| | |||||||||||| || |||||||||| || || |||||||||||||| ||| |||| ||||| | ||||||||| |||| |
|
|
| T |
17065412 |
ctatcttttaccaatcttcccctgtttctttcttgcaccgcttaaccaacataggacatttaaaaatatgcaattcatgcaagtttatgag |
17065322 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 338
Target Start/End: Original strand, 16784994 - 16785059
Alignment:
| Q |
273 |
aggaacgtgagctatcttctgccaatcttccccggtacctttcttgcatcgtttctccaacatagg |
338 |
Q |
| |
|
||||| |||||||||||| ||||||||||| || | ||| ||||||||| |||||||||||||| |
|
|
| T |
16784994 |
aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacatagg |
16785059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 341
Target Start/End: Original strand, 16778898 - 16778966
Alignment:
| Q |
273 |
aggaacgtgagctatcttctgccaatcttccccggtacctttcttgcatcgtttctccaacataggaca |
341 |
Q |
| |
|
||||| |||||||||||| ||||||||||| || | ||| ||||||||| ||||||||| ||||||| |
|
|
| T |
16778898 |
aggaatgtgagctatcttatgccaatcttcaccttttcctctcttgcatctcttctccaacttaggaca |
16778966 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 113; Significance: 5e-57; HSPs: 3)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 208 - 432
Target Start/End: Complemental strand, 3664 - 3440
Alignment:
| Q |
208 |
gatgaaataagcaagggattgagaagattactaaagtatattttttctgtagttaactccaatgaaggaacgtgagctatcttctgccaatcttccccgg |
307 |
Q |
| |
|
|||||||||||||||||||| || | |||||| ||||| |||||| || | ||||||||||| |||||||||||||||||| |||||||||||||| | |
|
|
| T |
3664 |
gatgaaataagcaagggattcagtatattactctagtatgttttttttgcaattaactccaattcaggaacgtgagctatcttttgccaatcttccccag |
3565 |
T |
|
| Q |
308 |
tacctttcttgcatcgtttctccaacataggacatctaacaataagcaatgcgtgcaagtttttgaggttctgaaagctatttggtagcgaccttacagt |
407 |
Q |
| |
|
| |||||||||||||||||||||||| ||| ||||| |||||||||||||| ||||||||| |||| || ||||||||||||||||||||| || || | |
|
|
| T |
3564 |
ttcctttcttgcatcgtttctccaacttagaacatccaacaataagcaatgtatgcaagtttatgagattttgaaagctatttggtagcgactttgcatt |
3465 |
T |
|
| Q |
408 |
agaacacgaaatgatttctattctt |
432 |
Q |
| |
|
| ||||||||||||||||| |||| |
|
|
| T |
3464 |
tgtacacgaaatgatttctactctt |
3440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 194 - 432
Target Start/End: Original strand, 7010 - 7248
Alignment:
| Q |
194 |
tacataaagagcacgatgaaataagcaagggattgagaagattactaaagtatattttttctgtagttaactccaatgaaggaacgtgagctatcttctg |
293 |
Q |
| |
|
|||||||||| || |||||||||||||||||||| || | | ||||| ||||| | | | |||| ||||||||||| |||||||||||||||||| || |
|
|
| T |
7010 |
tacataaagaacaagatgaaataagcaagggattcagtataatactatagtatgtgtatattgtaattaactccaatttaggaacgtgagctatcttttg |
7109 |
T |
|
| Q |
294 |
ccaatcttccccggtacctttcttgcatcgtttctccaacataggacatctaacaataagcaatgcgtgcaagtttttgaggttctgaaagctatttggt |
393 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||||||||| |||||||| |||| ||| | ||| ||||||||| ||||||| ||||||||||||||| |
|
|
| T |
7110 |
ccaatcttccccagttcctttcttggatcgtttctccaacttaggacatttaaccatagaccatgtatgcaagtttatgaggttttgaaagctatttggt |
7209 |
T |
|
| Q |
394 |
agcgaccttacagtagaacacgaaatgatttctattctt |
432 |
Q |
| |
|
|||||| ||||| | | ||||||||||||||||| |||| |
|
|
| T |
7210 |
agcgactttacatttgtacacgaaatgatttctactctt |
7248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 3912 - 3842
Alignment:
| Q |
44 |
acgcactgcattaagagttccaatatgtcagaaatcatcatacatttgagagaaaaacaagatctatgaag |
114 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
3912 |
acgcactgcatcaagagtttcaatatgtcagaaatcatcatacatttgggagaaaaacatgatctatgaag |
3842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 258 - 432
Target Start/End: Complemental strand, 4252 - 4078
Alignment:
| Q |
258 |
agttaactccaatgaaggaacgtgagctatcttctgccaatcttccccggtacctttcttgcatcgtttctccaacataggacatctaacaataagcaat |
357 |
Q |
| |
|
||||||||||| | ||||||||||| |||||| ||||||||||||||||| |||||||||||||| |||||||||||||| |||| ||||||||||||| |
|
|
| T |
4252 |
agttaactccagttcaggaacgtgagatatcttatgccaatcttccccggttcctttcttgcatcgcttctccaacatagggcatccaacaataagcaat |
4153 |
T |
|
| Q |
358 |
gcgtgcaagtttttgaggttctgaaagctatttggtagcgaccttacagtagaacacgaaatgatttctattctt |
432 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||| ||||| | | ||| |||| |||||||| |||| |
|
|
| T |
4152 |
gtatgcaagtttgtgaggttctgaaagctatttggtagcgacattacatttgcacatgaaaagatttctaatctt |
4078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 194 - 432
Target Start/End: Original strand, 2322 - 2561
Alignment:
| Q |
194 |
tacataaagagcacgatgaaataagcaagggattgagaagattactaaagtatattttttctgtagttaactccaatgaaggaacgtgagctatcttctg |
293 |
Q |
| |
|
|||||||||| || |||||||||||||||||||| || | ||||||| ||| | | | ||| ||||||||||| |||||||||||||||||| || |
|
|
| T |
2322 |
tacataaagaacaagatgaaataagcaagggattcagtatattactatggtaggtgtatatggtaattaactccaattcaggaacgtgagctatcttttg |
2421 |
T |
|
| Q |
294 |
ccaatcttccccggtacctttcttgcatcgtttctccaacatagg-acatctaacaataagcaatgcgtgcaagtttttgaggttctgaaagctatttgg |
392 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||| || |||| |||| ||| |||||||||| ||||||||| ||||||| |||||||||||||| |
|
|
| T |
2422 |
ccaatcttccccagttcctttcttgcatcgtttctcccacttaggaacattcaacgataagcaatgtatgcaagtttatgaggttttgaaagctatttgg |
2521 |
T |
|
| Q |
393 |
tagcgaccttacagtagaacacgaaatgatttctattctt |
432 |
Q |
| |
|
||||||| || || | | ||||||||||||||||| |||| |
|
|
| T |
2522 |
tagcgactttgcatttgtacacgaaatgatttctactctt |
2561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 2093 - 2160
Alignment:
| Q |
31 |
aatttggataatcacgcactgcattaagagttccaatatgtcagaaatcatcatacatttgagagaaa |
98 |
Q |
| |
|
||||| || |||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
2093 |
aatttcgaaaatcacgcgctgcattaagagttccaatatgtcagaaataatcatacatttgggagaaa |
2160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 338
Target Start/End: Original strand, 6881 - 6946
Alignment:
| Q |
273 |
aggaacgtgagctatcttctgccaatcttccccggtacctttcttgcatcgtttctccaacatagg |
338 |
Q |
| |
|
||||| |||||||||||| ||||||||||| || | ||| ||||||||| |||||||||||||| |
|
|
| T |
6881 |
aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacatagg |
6946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 338
Target Start/End: Original strand, 10570 - 10635
Alignment:
| Q |
273 |
aggaacgtgagctatcttctgccaatcttccccggtacctttcttgcatcgtttctccaacatagg |
338 |
Q |
| |
|
||||| |||||||||||| ||||||||||| || ||||| ||||||||| ||||||||| |||| |
|
|
| T |
10570 |
aggaatgtgagctatcttatgccaatcttcacctatacctctcttgcatctcttctccaacttagg |
10635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 341
Target Start/End: Original strand, 6222 - 6290
Alignment:
| Q |
273 |
aggaacgtgagctatcttctgccaatcttccccggtacctttcttgcatcgtttctccaacataggaca |
341 |
Q |
| |
|
||||| |||||||||||| ||||||||||| || | ||| ||||||||| |||||||| |||||||| |
|
|
| T |
6222 |
aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaatataggaca |
6290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 338
Target Start/End: Complemental strand, 38941790 - 38941725
Alignment:
| Q |
273 |
aggaacgtgagctatcttctgccaatcttccccggtacctttcttgcatcgtttctccaacatagg |
338 |
Q |
| |
|
||||| |||||||||||| ||||||||||| || | ||| ||||||||| |||||||||||||| |
|
|
| T |
38941790 |
aggaatgtgagctatcttatgccaatcttcaccttttcctctcttgcatctcttctccaacatagg |
38941725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 351
Target Start/End: Original strand, 13375810 - 13375882
Alignment:
| Q |
279 |
gtgagctatcttctgccaatcttccccggtacctttcttgcatcgtttctccaacataggacatctaacaata |
351 |
Q |
| |
|
|||||||||||| | ||||||||| || | ||| |||||||||| ||||||||||||| || ||||||||| |
|
|
| T |
13375810 |
gtgagctatcttatcccaatcttctcctattcctctcttgcatcgcttctccaacatagagcaactaacaata |
13375882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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