View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7043_high_24 (Length: 224)
Name: NF7043_high_24
Description: NF7043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7043_high_24 |
 | |
|
| [»] chr4 (5 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 24 - 224
Target Start/End: Original strand, 40310522 - 40310722
Alignment:
| Q |
24 |
aaattaagtatttttgatagataaataggtaacatgacctatccaaattatattagtatagtatttgttatttatagtatataataacatatgttactta |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40310522 |
aaattaagtatttttgatagataaataggtaacatgacttatccaaattatattagtatagtatttgttatttatagtatataataacataagttactta |
40310621 |
T |
|
| Q |
124 |
ccagaaccttggtctagggtgagttggatagtcctgccttgatcaatttgcttgatatggggctcagaccacgtgacatgaaagtcttgattaaaagttg |
223 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||| |
|
|
| T |
40310622 |
ccagagccttggtctagggtaagttggatagttctgccttgatcaatttgcttgatatggggttctgaccacgtgacatgaaaatcttgattaaaagttg |
40310721 |
T |
|
| Q |
224 |
c |
224 |
Q |
| |
|
| |
|
|
| T |
40310722 |
c |
40310722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 24 - 224
Target Start/End: Original strand, 40320598 - 40320798
Alignment:
| Q |
24 |
aaattaagtatttttgatagataaataggtaacatgacctatccaaattatattagtatagtatttgttatttatagtatataataacatatgttactta |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40320598 |
aaattaagtatttttgatagataaataggtaacatgacttatccaaattatattagtatagtatttgttatttatagtatataataacataagttactta |
40320697 |
T |
|
| Q |
124 |
ccagaaccttggtctagggtgagttggatagtcctgccttgatcaatttgcttgatatggggctcagaccacgtgacatgaaagtcttgattaaaagttg |
223 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||| |
|
|
| T |
40320698 |
ccagagccttggtctagggtaagttggatagttctgccttgatcaatttgcttgatatggggttctgaccacgtgacatgaaaatcttgattaaaagttg |
40320797 |
T |
|
| Q |
224 |
c |
224 |
Q |
| |
|
| |
|
|
| T |
40320798 |
c |
40320798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 24 - 224
Target Start/End: Original strand, 40330064 - 40330264
Alignment:
| Q |
24 |
aaattaagtatttttgatagataaataggtaacatgacctatccaaattatattagtatagtatttgttatttatagtatataataacatatgttactta |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40330064 |
aaattaagtatttttgatagataaataggtaacatgacttatccaaattatattagtatagtatttgttatttatagtatataataacataagttactta |
40330163 |
T |
|
| Q |
124 |
ccagaaccttggtctagggtgagttggatagtcctgccttgatcaatttgcttgatatggggctcagaccacgtgacatgaaagtcttgattaaaagttg |
223 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||| |
|
|
| T |
40330164 |
ccagagccttggtctagggtaagttggatagttctgccttgatcaatttgcttgatatggggttctgaccacgtgacatgaaaatcttgattaaaagttg |
40330263 |
T |
|
| Q |
224 |
c |
224 |
Q |
| |
|
| |
|
|
| T |
40330264 |
c |
40330264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 112 - 224
Target Start/End: Original strand, 40313586 - 40313698
Alignment:
| Q |
112 |
atatgttacttaccagaaccttggtctagggtgagttggatagtcctgccttgatcaatttgcttgatatggggctcagaccacgtgacatgaaagtctt |
211 |
Q |
| |
|
||||||| ||||| ||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
40313586 |
atatgttgcttacaagagccttggtctagggtaagttggatagttctgccttgatcaatttgcttgatatggggttctgaccacgtgacatgaaagtctt |
40313685 |
T |
|
| Q |
212 |
gattaaaagttgc |
224 |
Q |
| |
|
||||||||||||| |
|
|
| T |
40313686 |
gattaaaagttgc |
40313698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 112 - 224
Target Start/End: Original strand, 40323662 - 40323774
Alignment:
| Q |
112 |
atatgttacttaccagaaccttggtctagggtgagttggatagtcctgccttgatcaatttgcttgatatggggctcagaccacgtgacatgaaagtctt |
211 |
Q |
| |
|
||||||| ||||| ||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
40323662 |
atatgttgcttacaagagccttggtctagggtaagttggatagttctgccttgatcaatttgcttgatatggggttctgaccacgtgacatgaaagtctt |
40323761 |
T |
|
| Q |
212 |
gattaaaagttgc |
224 |
Q |
| |
|
||||||||||||| |
|
|
| T |
40323762 |
gattaaaagttgc |
40323774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University