View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7043_high_25 (Length: 207)
Name: NF7043_high_25
Description: NF7043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7043_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 4e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 34 - 193
Target Start/End: Complemental strand, 38328402 - 38328243
Alignment:
| Q |
34 |
agttcaataaacacagttttcaagatatgtccaccaactggcatgagacaaatgtagctaagaggttatagaaggatggtttgttggcaaatggcaagca |
133 |
Q |
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| T |
38328402 |
agttcaataaacacagttttcaagatatgtccaccaactggcatgagacaaatgtagctaagaggttatagaaggatggtttgttggcaaatggcaagca |
38328303 |
T |
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| Q |
134 |
cagacatcacctagaattttttgttgttgttgatagaaacatgccaccttagatgttact |
193 |
Q |
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| T |
38328302 |
cagacatcacctaggattttttgttgttgttgatagaaacatgccaccttagatgttact |
38328243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 38330167 - 38330021
Alignment:
| Q |
34 |
agttcaataaacacagttttcaagatatgtccaccaactggcatgagacaaatgtagctaagaggttatagaaggatggtttgttggcaaatggcaagca |
133 |
Q |
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| T |
38330167 |
agttcaataaagacattcttcaaaatatgtctaccaattagcttgagacaaatgctggtaaggggttatactaggataatttgttgacaaatggcaagca |
38330068 |
T |
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| Q |
134 |
cagacatcacctagaattttttgttgttgttgatagaaacatgccacct |
182 |
Q |
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| T |
38330067 |
cacaca--acctagaattttttgttcttgttgctagaagcatgccacct |
38330021 |
T |
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