View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7043_low_10 (Length: 443)

Name: NF7043_low_10
Description: NF7043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7043_low_10
NF7043_low_10
[»] chr6 (10 HSPs)
chr6 (194-432)||(18808462-18808700)
chr6 (194-432)||(18875462-18875700)
chr6 (44-114)||(18875862-18875932)
chr6 (40-114)||(18790665-18790739)
chr6 (31-98)||(18808862-18808929)
chr6 (273-323)||(16836439-16836489)
chr6 (273-323)||(16841550-16841600)
chr6 (284-374)||(17065322-17065412)
chr6 (273-338)||(16784994-16785059)
chr6 (273-341)||(16778898-16778966)
[»] scaffold0511 (3 HSPs)
scaffold0511 (208-432)||(3440-3664)
scaffold0511 (194-432)||(7010-7248)
scaffold0511 (44-114)||(3842-3912)
[»] scaffold0144 (1 HSPs)
scaffold0144 (258-432)||(4078-4252)
[»] scaffold0230 (2 HSPs)
scaffold0230 (194-432)||(2322-2561)
scaffold0230 (31-98)||(2093-2160)
[»] scaffold0256 (1 HSPs)
scaffold0256 (273-338)||(6881-6946)
[»] scaffold0133 (2 HSPs)
scaffold0133 (273-338)||(10570-10635)
scaffold0133 (273-341)||(6222-6290)
[»] chr3 (1 HSPs)
chr3 (273-338)||(38941725-38941790)
[»] chr8 (1 HSPs)
chr8 (279-351)||(13375810-13375882)


Alignment Details
Target: chr6 (Bit Score: 115; Significance: 3e-58; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 194 - 432
Target Start/End: Complemental strand, 18808700 - 18808462
Alignment:
Q  194 tacataaagagcacgatgaaataagcaagggattgagaagattactaaagtatattttttctgtagttaactccaatgaaggaacgtgagctatcttctg 293  Q
    |||||||||| || |||||||||||||||||||| || | ||||||| ||||| | | |  |||| |||||||||||  |||||||||||||||||| ||    
T  18808700 tacataaagaacaagatgaaataagcaagggattcagtatattactatagtatgtgtatattgtaattaactccaattcaggaacgtgagctatcttttg 18808601  T
Q  294 ccaatcttccccggtacctttcttgcatcgtttctccaacataggacatctaacaataagcaatgcgtgcaagtttttgaggttctgaaagctatttggt 393  Q
    |||||||||||| || |||||||||||||||||||||||| ||||||||  |||||||  |||||  ||||||||| ||||||| |||||||||||||||    
T  18808600 ccaatcttccccagttcctttcttgcatcgtttctccaacttaggacattcaacaatagacaatgtatgcaagtttatgaggttttgaaagctatttggt 18808501  T
Q  394 agcgaccttacagtagaacacgaaatgatttctattctt 432  Q
    |||||| ||||| | | ||||||||||||||||| ||||    
T  18808500 agcgactttacatttgtacacgaaatgatttctactctt 18808462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 194 - 432
Target Start/End: Complemental strand, 18875700 - 18875462
Alignment:
Q  194 tacataaagagcacgatgaaataagcaagggattgagaagattactaaagtatattttttctgtagttaactccaatgaaggaacgtgagctatcttctg 293  Q
    ||||||||||  | |||||||||||||||||||| || | ||||||| ||||| | | ||||| | |||||||||||  |||||||||||||||||| ||    
T  18875700 tacataaagacaaagatgaaataagcaagggattcagtatattactatagtatgtgtcttctgcaattaactccaattcaggaacgtgagctatcttttg 18875601  T
Q  294 ccaatcttccccggtacctttcttgcatcgtttctccaacataggacatctaacaataagcaatgcgtgcaagtttttgaggttctgaaagctatttggt 393  Q
    |||||||| ||| || |||||||||||||||||| ||||||||| ||||| || ||||||||| |  ||||||||| ||||||| |||||||| ||||||    
T  18875600 ccaatctttcccagttcctttcttgcatcgtttcaccaacatagaacatcgaaaaataagcaacgtatgcaagtttatgaggttttgaaagctgtttggt 18875501  T
Q  394 agcgaccttacagtagaacacgaaatgatttctattctt 432  Q
    |||||| ||| | | | |||  |||||||||||| ||||    
T  18875500 agcgactttaaatttggacaaaaaatgatttctactctt 18875462  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 18875932 - 18875862
Alignment:
Q  44 acgcactgcattaagagttccaatatgtcagaaatcatcatacatttgagagaaaaacaagatctatgaag 114  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18875932 acgcactgcatcaagagtttcaatatgtcagaaatcatcatacatttgggagaaaaacaagatctatgaag 18875862  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 18790739 - 18790665
Alignment:
Q  40 aatcacgcactgcattaagagttccaatatgtcagaaatcatcatacatttgagagaaaaacaagatctatgaag 114  Q
    |||||||| |||||  ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18790739 aatcacgccctgcaccaagcgttccaatatgtcagaaatcatcatacatttgggagaaaaacaagatctatgaag 18790665  T

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Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 18808929 - 18808862
Alignment:
Q  31 aatttggataatcacgcactgcattaagagttccaatatgtcagaaatcatcatacatttgagagaaa 98  Q
    ||||| || |||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  18808929 aatttcgaaaatcacgcgctgcattaagagttccaatatgtcagaaataatcatacatttgggagaaa 18808862  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 16836439 - 16836489
Alignment:
Q  273 aggaacgtgagctatcttctgccaatcttccccggtacctttcttgcatcg 323  Q
    ||||| |||||||||||| |||||||||||||| ||  |||||||||||||    
T  16836439 aggaatgtgagctatcttgtgccaatcttcccctgtttctttcttgcatcg 16836489  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 16841550 - 16841600
Alignment:
Q  273 aggaacgtgagctatcttctgccaatcttccccggtacctttcttgcatcg 323  Q
    ||||| |||||||||||| |||||||||||||| ||  |||||||||||||    
T  16841550 aggaatgtgagctatcttatgccaatcttcccctgtttctttcttgcatcg 16841600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 374
Target Start/End: Complemental strand, 17065412 - 17065322
Alignment:
Q  284 ctatcttctgccaatcttccccggtacctttcttgcatcgtttctccaacataggacatctaacaataagcaatgcgtgcaagtttttgag 374  Q
    ||||||| | |||||||||||| ||  |||||||||| || ||  |||||||||||||| ||| |||| ||||| | ||||||||| ||||    
T  17065412 ctatcttttaccaatcttcccctgtttctttcttgcaccgcttaaccaacataggacatttaaaaatatgcaattcatgcaagtttatgag 17065322  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 338
Target Start/End: Original strand, 16784994 - 16785059
Alignment:
Q  273 aggaacgtgagctatcttctgccaatcttccccggtacctttcttgcatcgtttctccaacatagg 338  Q
    ||||| |||||||||||| ||||||||||| ||  | ||| |||||||||  ||||||||||||||    
T  16784994 aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacatagg 16785059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 341
Target Start/End: Original strand, 16778898 - 16778966
Alignment:
Q  273 aggaacgtgagctatcttctgccaatcttccccggtacctttcttgcatcgtttctccaacataggaca 341  Q
    ||||| |||||||||||| ||||||||||| ||  | ||| |||||||||  ||||||||| |||||||    
T  16778898 aggaatgtgagctatcttatgccaatcttcaccttttcctctcttgcatctcttctccaacttaggaca 16778966  T

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Target: scaffold0511 (Bit Score: 113; Significance: 5e-57; HSPs: 3)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 208 - 432
Target Start/End: Complemental strand, 3664 - 3440
Alignment:
Q  208 gatgaaataagcaagggattgagaagattactaaagtatattttttctgtagttaactccaatgaaggaacgtgagctatcttctgccaatcttccccgg 307  Q
    |||||||||||||||||||| || | ||||||  ||||| |||||| || | |||||||||||  |||||||||||||||||| |||||||||||||| |    
T  3664 gatgaaataagcaagggattcagtatattactctagtatgttttttttgcaattaactccaattcaggaacgtgagctatcttttgccaatcttccccag 3565  T
Q  308 tacctttcttgcatcgtttctccaacataggacatctaacaataagcaatgcgtgcaagtttttgaggttctgaaagctatttggtagcgaccttacagt 407  Q
    | |||||||||||||||||||||||| ||| ||||| ||||||||||||||  ||||||||| |||| || ||||||||||||||||||||| || || |    
T  3564 ttcctttcttgcatcgtttctccaacttagaacatccaacaataagcaatgtatgcaagtttatgagattttgaaagctatttggtagcgactttgcatt 3465  T
Q  408 agaacacgaaatgatttctattctt 432  Q
     | ||||||||||||||||| ||||    
T  3464 tgtacacgaaatgatttctactctt 3440  T

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Target: scaffold0511; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 194 - 432
Target Start/End: Original strand, 7010 - 7248
Alignment:
Q  194 tacataaagagcacgatgaaataagcaagggattgagaagattactaaagtatattttttctgtagttaactccaatgaaggaacgtgagctatcttctg 293  Q
    |||||||||| || |||||||||||||||||||| || | | ||||| ||||| | | |  |||| |||||||||||  |||||||||||||||||| ||    
T  7010 tacataaagaacaagatgaaataagcaagggattcagtataatactatagtatgtgtatattgtaattaactccaatttaggaacgtgagctatcttttg 7109  T
Q  294 ccaatcttccccggtacctttcttgcatcgtttctccaacataggacatctaacaataagcaatgcgtgcaagtttttgaggttctgaaagctatttggt 393  Q
    |||||||||||| || ||||||||| |||||||||||||| |||||||| |||| |||  | |||  ||||||||| ||||||| |||||||||||||||    
T  7110 ccaatcttccccagttcctttcttggatcgtttctccaacttaggacatttaaccatagaccatgtatgcaagtttatgaggttttgaaagctatttggt 7209  T
Q  394 agcgaccttacagtagaacacgaaatgatttctattctt 432  Q
    |||||| ||||| | | ||||||||||||||||| ||||    
T  7210 agcgactttacatttgtacacgaaatgatttctactctt 7248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 3912 - 3842
Alignment:
Q  44 acgcactgcattaagagttccaatatgtcagaaatcatcatacatttgagagaaaaacaagatctatgaag 114  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  3912 acgcactgcatcaagagtttcaatatgtcagaaatcatcatacatttgggagaaaaacatgatctatgaag 3842  T

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Target: scaffold0144 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 258 - 432
Target Start/End: Complemental strand, 4252 - 4078
Alignment:
Q  258 agttaactccaatgaaggaacgtgagctatcttctgccaatcttccccggtacctttcttgcatcgtttctccaacataggacatctaacaataagcaat 357  Q
    ||||||||||| |  ||||||||||| |||||| ||||||||||||||||| |||||||||||||| |||||||||||||| |||| |||||||||||||    
T  4252 agttaactccagttcaggaacgtgagatatcttatgccaatcttccccggttcctttcttgcatcgcttctccaacatagggcatccaacaataagcaat 4153  T
Q  358 gcgtgcaagtttttgaggttctgaaagctatttggtagcgaccttacagtagaacacgaaatgatttctattctt 432  Q
    |  ||||||||| ||||||||||||||||||||||||||||| ||||| | | ||| |||| |||||||| ||||    
T  4152 gtatgcaagtttgtgaggttctgaaagctatttggtagcgacattacatttgcacatgaaaagatttctaatctt 4078  T

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Target: scaffold0230 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 194 - 432
Target Start/End: Original strand, 2322 - 2561
Alignment:
Q  194 tacataaagagcacgatgaaataagcaagggattgagaagattactaaagtatattttttctgtagttaactccaatgaaggaacgtgagctatcttctg 293  Q
    |||||||||| || |||||||||||||||||||| || | |||||||  |||  | | |   ||| |||||||||||  |||||||||||||||||| ||    
T  2322 tacataaagaacaagatgaaataagcaagggattcagtatattactatggtaggtgtatatggtaattaactccaattcaggaacgtgagctatcttttg 2421  T
Q  294 ccaatcttccccggtacctttcttgcatcgtttctccaacatagg-acatctaacaataagcaatgcgtgcaagtttttgaggttctgaaagctatttgg 392  Q
    |||||||||||| || ||||||||||||||||||||| || |||| ||||  ||| ||||||||||  ||||||||| ||||||| ||||||||||||||    
T  2422 ccaatcttccccagttcctttcttgcatcgtttctcccacttaggaacattcaacgataagcaatgtatgcaagtttatgaggttttgaaagctatttgg 2521  T
Q  393 tagcgaccttacagtagaacacgaaatgatttctattctt 432  Q
    ||||||| || || | | ||||||||||||||||| ||||    
T  2522 tagcgactttgcatttgtacacgaaatgatttctactctt 2561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 2093 - 2160
Alignment:
Q  31 aatttggataatcacgcactgcattaagagttccaatatgtcagaaatcatcatacatttgagagaaa 98  Q
    ||||| || |||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  2093 aatttcgaaaatcacgcgctgcattaagagttccaatatgtcagaaataatcatacatttgggagaaa 2160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 338
Target Start/End: Original strand, 6881 - 6946
Alignment:
Q  273 aggaacgtgagctatcttctgccaatcttccccggtacctttcttgcatcgtttctccaacatagg 338  Q
    ||||| |||||||||||| ||||||||||| ||  | ||| |||||||||  ||||||||||||||    
T  6881 aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacatagg 6946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 338
Target Start/End: Original strand, 10570 - 10635
Alignment:
Q  273 aggaacgtgagctatcttctgccaatcttccccggtacctttcttgcatcgtttctccaacatagg 338  Q
    ||||| |||||||||||| ||||||||||| ||  ||||| |||||||||  ||||||||| ||||    
T  10570 aggaatgtgagctatcttatgccaatcttcacctatacctctcttgcatctcttctccaacttagg 10635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 341
Target Start/End: Original strand, 6222 - 6290
Alignment:
Q  273 aggaacgtgagctatcttctgccaatcttccccggtacctttcttgcatcgtttctccaacataggaca 341  Q
    ||||| |||||||||||| ||||||||||| ||  | ||| |||||||||  |||||||| ||||||||    
T  6222 aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaatataggaca 6290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 338
Target Start/End: Complemental strand, 38941790 - 38941725
Alignment:
Q  273 aggaacgtgagctatcttctgccaatcttccccggtacctttcttgcatcgtttctccaacatagg 338  Q
    ||||| |||||||||||| ||||||||||| ||  | ||| |||||||||  ||||||||||||||    
T  38941790 aggaatgtgagctatcttatgccaatcttcaccttttcctctcttgcatctcttctccaacatagg 38941725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 351
Target Start/End: Original strand, 13375810 - 13375882
Alignment:
Q  279 gtgagctatcttctgccaatcttccccggtacctttcttgcatcgtttctccaacataggacatctaacaata 351  Q
    |||||||||||| | ||||||||| ||  | ||| |||||||||| |||||||||||||  || |||||||||    
T  13375810 gtgagctatcttatcccaatcttctcctattcctctcttgcatcgcttctccaacatagagcaactaacaata 13375882  T

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