View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7043_low_11 (Length: 422)
Name: NF7043_low_11
Description: NF7043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7043_low_11 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 15 - 422
Target Start/End: Complemental strand, 1784957 - 1784551
Alignment:
| Q |
15 |
acatcacatctccacacccaaaatcttaagataatagatatatgcgtcaagtctcttatatatttttcatttagctaagttataattaatgcgaaattag |
114 |
Q |
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| T |
1784957 |
acatcacatctccacacccaaaatcttaagatgatagatatatgtgtcaagtctcttatataactttcatttaactaagttataattaatgcgaaactag |
1784858 |
T |
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| Q |
115 |
gcactcacacttgaattccaacatggtgttttttagagttaatagaatatttgttatttaatttcatgtttgttaatagagtattcatatgcatataaaa |
214 |
Q |
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| T |
1784857 |
gcactcgcacttgaattccaacatggt-ttttttagagttaatagaatatttgttatttaatttcatgtttgttaatagagtattcatatgcatataaaa |
1784759 |
T |
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| Q |
215 |
atatttcaagaggtttagattagaccgtccaaattgaaacatgaacaaatcagtcccttttgattcttgtgtacaattagtcttgttgccggccaatgca |
314 |
Q |
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| T |
1784758 |
atatttcaagaggtttaggttagaccgtccaaattgaaacatgaacaaatcagtcccttttgattcttgtgtacaattagtcttgttgccggccaatgca |
1784659 |
T |
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| Q |
315 |
agttactgtatagtccaattataatgttattctcacttgataagacaatttcttctattttaacnnnnnnnntcattgtcatgcatttataattaaagag |
414 |
Q |
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| T |
1784658 |
agttactgtatagtccaattataatgttattctcacttgataagacaatttcttctattttaacaaaaaaaatcattgtcatgcatttataattaaagag |
1784559 |
T |
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| Q |
415 |
taaccaaa |
422 |
Q |
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| T |
1784558 |
aaaccaaa |
1784551 |
T |
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