View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7043_low_12 (Length: 361)
Name: NF7043_low_12
Description: NF7043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7043_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 44041466 - 44041148
Alignment:
| Q |
18 |
ctatttacctgaagatgactgctagaacaaaagtgatcgccggagtcaagttgctcatagcagatccaagggtgggagagctgtagcttatgccagtgaa |
117 |
Q |
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| T |
44041466 |
ctatttacctgaagatgactgctagaacaaaagtgatcgccggagtcaagttgctcatagcagatccaagggtgggagagctgtagcttatgccagtgaa |
44041367 |
T |
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| Q |
118 |
tacacaattctgcatgatagttatgctgcaaatttccaatgatcatgaatcatgattcctcatttctatttagtaattatctcataaagggatagaaaat |
217 |
Q |
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| T |
44041366 |
tacacaattctgcatgatagttatgctgcaaatttccaatgatc-------atgattcttcatttctatttagtaattatctcataaagggatagaaaat |
44041274 |
T |
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| Q |
218 |
agacacaatcaagattttaaaaacaatcagccaccacagttgtggctgcaattataaactcttttagttccagtatcagtcgaattcatgcaatcgccat |
317 |
Q |
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| T |
44041273 |
agacacaatcaagattttaaaaacaatcagccaccacagttgtggccgcaatt---aaatcttttagttccagtatcagtcgaatccatgcaatcgccat |
44041177 |
T |
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| Q |
318 |
ttgaaaccttaaataatcagccaccacag |
346 |
Q |
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| T |
44041176 |
ttaaaaccttaaataatcagccaccacag |
44041148 |
T |
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