View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7043_low_15 (Length: 345)
Name: NF7043_low_15
Description: NF7043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7043_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 7 - 331
Target Start/End: Original strand, 363749 - 364071
Alignment:
| Q |
7 |
tttggtgttaccaagaacagcatcaaataaaatttgaattcactaataataaaacagtagttcgttcaccgtatcnnnnnnnnnntcttagtattattat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
363749 |
tttggtgttaccaagaacagcatcaaataaaatttgaattcactaataataaaacagtagttcgttcaccgtatcaaaaaaaaa-tcttagtattattat |
363847 |
T |
|
| Q |
107 |
catataataaaacggcactaactaactataaccaaacaactaatcaaactcctctnnnnnnnntatactataatattataaaacatttcctatcagccag |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
363848 |
catataataaaacggcactaactaactataaccaaacaactaatcaaactcctctaaaaaaaatatactataatattataaaacatttcctatcagccag |
363947 |
T |
|
| Q |
207 |
cagcaacaattgcagtttgcacaatattttatttttacatataagccaacttgtgaatcatttatttatttttgcaaactcactttaattgggattttga |
306 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
363948 |
cagcaacaattgcagtttgcacaatattt-atttttacatataagccaacttgtgaatcatttatttatttttgcaaactcactttaattgggattttga |
364046 |
T |
|
| Q |
307 |
cctccagcagatacctcaagggatt |
331 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
364047 |
cctccagcagatacctcaagggatt |
364071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University