View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7043_low_17 (Length: 296)
Name: NF7043_low_17
Description: NF7043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7043_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 1136216 - 1135940
Alignment:
| Q |
19 |
aggctagagatgaaatcgagagagccttgaataaagcagcttttaaagtaat---agtcatgatgatcgtacagtgtgtcttgaaatccgtagaaagcgc |
115 |
Q |
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| T |
1136216 |
aggctaaagatgaaatcgagagagccttgaataaagcagcttttaaagtaatgcaagtcatgatgatcgtacagtgtgtcttgaaatccgtagaaagcgc |
1136117 |
T |
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| Q |
116 |
aattgtagaaagcacttttgtttcctgaagtgcaaaatgcaatagcttaatcttcgtttaactcaatgcgtggtgatgcagcgttctgtttttat-nnnn |
214 |
Q |
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| T |
1136116 |
aattgtagaaagcacttttgtttcctgaagtgaaaaatgcaatagcttaatcttcgtttaacccaatgcgtggtgatgcagcgttctgtttttataaaaa |
1136017 |
T |
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| Q |
215 |
nnnnntgcgagtaaccatttttatcatacttttaatattttataaattatgattttcttatgcccacttcttctcac |
291 |
Q |
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| T |
1136016 |
aaaaatgcgagtaaccatttttatcatacttttaatattttataaattatgattttcttatgcccacttcttttcac |
1135940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 271
Target Start/End: Complemental strand, 8622003 - 8621753
Alignment:
| Q |
26 |
agatgaaatcgagagagccttgaataaagcagcttttaaagtaat---agtcatgatgatcgtacagtgtgtcttgaaatccgtagaaagcgcaattgta |
122 |
Q |
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| T |
8622003 |
agatgaaatccacggagccttgaataaagcagttttcaaaataatgcaacccctgatgatcatataatgtgtcctgaaatccgtaaaacgagcagttgta |
8621904 |
T |
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| Q |
123 |
gaaagcacttttgtttcctgaagtgcaaaatgcaatagcttaatcttcgtttaactcaatgcgtggtgatgcagcgttctgtttttat-nnnnnnnnntg |
221 |
Q |
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| T |
8621903 |
aaacgcacttttgtttcctgaagtgcgaagtgcaacggcttgatcatcatttgacccaatacgaggtgatgccgtgttctgttttaataaaaaaatattg |
8621804 |
T |
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| Q |
222 |
cgagtaaccatttttatcatacttttaa-tattttataaattatgattttc |
271 |
Q |
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| T |
8621803 |
taagtaaccatttttatcatccttttaattattttataaattatgattttc |
8621753 |
T |
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