View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7043_low_18 (Length: 294)
Name: NF7043_low_18
Description: NF7043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7043_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 31 - 276
Target Start/End: Complemental strand, 4610746 - 4610498
Alignment:
| Q |
31 |
gttggtcgagtaaacttcatcctaaagtttgcaaaatgagaggaaaacaaagaccc------cgtaatattgtgaccaaataattctgtaacattggtgc |
124 |
Q |
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| T |
4610746 |
gttggtcgagtaaacttcatcctaaagtttgcaaaatgagaggagaacaaagaccgatatgacgtaatattgtgaccaaat---tctataacattggtgt |
4610650 |
T |
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| Q |
125 |
gtactaagttgaaagcatcagcctaataattgaatacatttaacaatttaaaaggcgcttatatttctagaccatggtttttatcttaatggttgcttac |
224 |
Q |
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| T |
4610649 |
gtactaagttgaaagcatcagcctaataattgaatacatttaacaatttaaaaggcgcttatatttctagaccatggtttttatcttaatggttgcttac |
4610550 |
T |
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| Q |
225 |
aaaacagtctcattctctttaactctggacttggtggaaatccagaatatgt |
276 |
Q |
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| T |
4610549 |
aaaacagtctcattctctttaattcgggacttggtggaaatccagaatatgt |
4610498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 5108948 - 5108882
Alignment:
| Q |
148 |
taataattgaatacatttaacaatttaaaaggcgcttatatttctagaccatggtttttatcttaat |
214 |
Q |
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| T |
5108948 |
taataatcgaatacatttatcaatttaaaaggcgcttatacttccggacaattgttttgatcttaat |
5108882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 276
Target Start/End: Complemental strand, 5108621 - 5108568
Alignment:
| Q |
223 |
acaaaacagtctcattctctttaactctggacttggtggaaatccagaatatgt |
276 |
Q |
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| T |
5108621 |
acaaaacagtctcattcacttcaattgtggagttggtggaaattcagaatatgt |
5108568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 139
Target Start/End: Original strand, 29247350 - 29247455
Alignment:
| Q |
37 |
cgagtaaacttcatcctaaagtttgcaaaatgagaggaaaacaaagacc------ccgtaatattgtgaccaaataattctgtaacattggtgcgtacta |
130 |
Q |
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| T |
29247350 |
cgagtaaactccaccctagagtttgcaaaatgagaggagaacaaaggccgacatgccgtaataacgtgacca---aatcctgtaacattggtgcgtacgg |
29247446 |
T |
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| Q |
131 |
agttgaaag |
139 |
Q |
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| T |
29247447 |
agttgaaag |
29247455 |
T |
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