View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7043_low_2 (Length: 751)
Name: NF7043_low_2
Description: NF7043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7043_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 711; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 711; E-Value: 0
Query Start/End: Original strand, 1 - 734
Target Start/End: Complemental strand, 48415421 - 48414685
Alignment:
| Q |
1 |
tatatgaattaaatccgttcacattacggatgtttgtgttggcattttcaggaaagcattcaacaacacggtgctatgtgatgcaacagaaaaacaacaa |
100 |
Q |
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| T |
48415421 |
tatatgaattaaatccgctcacattacggatgtttgtgttggcattttcaggaaagcattcaacaacacggtgctatgtgatgcaacagaaaaacaacaa |
48415322 |
T |
|
| Q |
101 |
catgaaaaggaaaacaacgagagatgtttggtttccgacaacaactttg---gtgagcttgaagctgtgtacaaacttggtcagaatcaagtgttcgcgg |
197 |
Q |
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| T |
48415321 |
catgaaaaggaaaacaacgagagatgtttggtttccgacaacaactttgctggtgagcttgaagctgtgtacaaacttggtcagaatcaagtgttcgtgg |
48415222 |
T |
|
| Q |
198 |
aggaacatgattcgaggagaagggctaggaagaagaagcaaaagaagagactgaaggaagaaatgagtttgatgagagtgttctttaaaagattgaccaa |
297 |
Q |
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| T |
48415221 |
aggaacatgattcgaggagaagggctaggaagaagaagcaaaagaagagactgaaggaagaaatgagtttgatgagagtgttctttaaaagattgaccaa |
48415122 |
T |
|
| Q |
298 |
aactgtggttaatcaccaagaggttcttcagaataaattgttggaggtgattgatagaatggaaaaagaaaggatgcagagggaagaaaattggaggcgt |
397 |
Q |
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| T |
48415121 |
aactgtggttaatcaccaagaggttcttcagaataaattgttggaggtgattgatagaatggaaaaagaaaggatgcagagggaagaaaattggaggcgg |
48415022 |
T |
|
| Q |
398 |
gaagaaagtgaaatatacgaaagagaagctgtgatgaaagcacgtgagcgtgattttgctaaacggagagaatcttccattgtttccagcattgagaaaa |
497 |
Q |
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| T |
48415021 |
gaagaaagtgaaatatacgaaagagaagctgtgatgaaagcacgtgagcgtgattttgctaaacggagagaatcttccattgtttccagcattgagaaaa |
48414922 |
T |
|
| Q |
498 |
taacaggtcgaagattttctagtcagtgacagtaatagaatagaagattaatgtaaggattatttaaattttattatagatgtagttttagtttgtgttg |
597 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48414921 |
taacaggtcgaagattttctagtcagtgacagtaatagaatagaagattaatgtaaggattatttaaattttattatagatgtagttttagtttgtgttg |
48414822 |
T |
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| Q |
598 |
aaagaaagattgaaatttgccaactacattcatttgcagaaaatgctgaatgcatgtcacaactgcaaccatcaataatgatgtagttttaatatgatta |
697 |
Q |
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| T |
48414821 |
aaagaaagattgaaatttgccaactacattcatttgcagaaaatgctgaatgcatgtcacaactgcaaccatcaataatgatgtagttttaatatgatta |
48414722 |
T |
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| Q |
698 |
gtttgcatatcctgaactttggttgagatgtaaaagt |
734 |
Q |
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| T |
48414721 |
gtttgcatatcctgaactttggttgagatgtaaaagt |
48414685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 614
Target Start/End: Complemental strand, 48403722 - 48403658
Alignment:
| Q |
549 |
tgtaaggattatttaaattttattatagatgtagttttagtttgtgttgaaagaaagattgaaatt |
614 |
Q |
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| T |
48403722 |
tgtaagtattatttcaattttatt-taaatgcaatttgagtttgtgttgaaaaaaagattgaaatt |
48403658 |
T |
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