View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7043_low_20 (Length: 253)
Name: NF7043_low_20
Description: NF7043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7043_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 21115660 - 21115444
Alignment:
| Q |
21 |
gctgccacaactcaatttcatgccttccttttaaggacgaccctatagttttgattgataagggaagtccattacactcattgcagacttcccgtggcac |
120 |
Q |
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| T |
21115660 |
gctgccacaactcaatttcatgccttccttttaaggacgaccctatagttttgattgataagggaagtccattacactcattgcagacttcccgtggcac |
21115561 |
T |
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| Q |
121 |
accatccaataacttggagtattcgtcatcaattcttgcaaacttttggaataatgtccaagattcatcttcagacaagagccccaaatgaatcttcttt |
220 |
Q |
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| T |
21115560 |
accatccaataacttggagtattcgtcatcaattcttgcaaacttttggaataatgtccaagattcatcttcagacaagagccccaaatgaatcttcttt |
21115461 |
T |
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| Q |
221 |
tgacagtccattgatgt |
237 |
Q |
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||||||||||||||||| |
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| T |
21115460 |
tgacagtccattgatgt |
21115444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 65 - 225
Target Start/End: Complemental strand, 21123043 - 21122883
Alignment:
| Q |
65 |
atagttttgattgataagggaagtccattacactcattgcagacttcccgtggcacaccatccaataacttggagtattcgtcatcaattcttgcaaact |
164 |
Q |
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| T |
21123043 |
atagttttgattgctaagggaagtcccttgcattcatagcagatttcttgtggtacaccatctaatgacacagagaattcgtcatcaattactgcaagct |
21122944 |
T |
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| Q |
165 |
tttggaataatgtccaagattcatcttcagacaagagccccaaatgaatcttcttttgaca |
225 |
Q |
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| T |
21122943 |
tttggaagaatgtccaggattcatctttggacaagagccccaaatgaatcatcttgtgaca |
21122883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 232
Target Start/End: Original strand, 21715368 - 21715514
Alignment:
| Q |
86 |
agtccattacactcattgcagacttcccgtggcacaccatccaataacttggagtattcgtcatcaattcttgcaaacttttggaataatgtccaagatt |
185 |
Q |
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| T |
21715368 |
agtcccttacatttatcgcagagttctcgtggcacaccatccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggatt |
21715467 |
T |
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| Q |
186 |
catcttcagacaagagccccaaatgaatcttcttttgacagtccatt |
232 |
Q |
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|||||| ||| |||||| ||| ||||| |||||||||||||||||| |
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| T |
21715468 |
catctttagataagagcgccaggtgaatattcttttgacagtccatt |
21715514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 234
Target Start/End: Complemental strand, 21622647 - 21622499
Alignment:
| Q |
86 |
agtccattacactcattgcagacttcccgtggcacaccatccaataacttggagtattcgtcatcaattcttgcaaacttttggaataatgtccaagatt |
185 |
Q |
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| T |
21622647 |
agtcccttacatttatcgcagagttctcgtggcaaaccatccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggatt |
21622548 |
T |
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| Q |
186 |
catcttcagacaagagccccaaatgaatcttcttttgacagtccattga |
234 |
Q |
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|||||| ||| || ||| | | |||||| |||||||||||||||||||| |
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| T |
21622547 |
catctttagataaaagctctagatgaatattcttttgacagtccattga |
21622499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 234
Target Start/End: Complemental strand, 21644361 - 21644213
Alignment:
| Q |
86 |
agtccattacactcattgcagacttcccgtggcacaccatccaataacttggagtattcgtcatcaattcttgcaaacttttggaataatgtccaagatt |
185 |
Q |
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||||| ||||| | || ||||| ||| ||||||| |||||||| | ||||||| | | |||| ||| ||||| ||||||||| || ||||| |||| |
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| T |
21644361 |
agtcccttacatttatcgcagagttctcgtggcaaaccatccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggatt |
21644262 |
T |
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| Q |
186 |
catcttcagacaagagccccaaatgaatcttcttttgacagtccattga |
234 |
Q |
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|||||| ||| || ||| | | |||||| |||||||||||||||||||| |
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| T |
21644261 |
catctttagataaaagctctagatgaatattcttttgacagtccattga |
21644213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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