View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7043_low_21 (Length: 253)

Name: NF7043_low_21
Description: NF7043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7043_low_21
NF7043_low_21
[»] chr5 (8 HSPs)
chr5 (18-240)||(1058857-1059079)
chr5 (18-240)||(1071676-1071898)
chr5 (18-240)||(1065949-1066171)
chr5 (19-239)||(1033948-1034168)
chr5 (34-239)||(1044335-1044540)
chr5 (18-179)||(1053653-1053814)
chr5 (19-176)||(1046984-1047141)
chr5 (19-179)||(1640388-1640548)
[»] scaffold0001 (1 HSPs)
scaffold0001 (87-170)||(65854-65937)
[»] chr3 (1 HSPs)
chr3 (87-148)||(12121338-12121399)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 1059079 - 1058857
Alignment:
Q  18 agtataacctataactggatctgaagtgtagaatgtcgccctgttatacttgtttagaggagcatcaagtgcaaatctcttcggcaaatctggattagct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1059079 agtataacctataactggatctgaagtgtagaatgtcgccctgttatacttgtttagaggagcattaagtgcaaatctcttcggcaaatctggattagct 1058980  T
Q  118 aagaacaaacgaccatatacaacaaggtctgtcctattttcagctatggcattgatcccatcatttcggtcgtaacctcctgcagccaggaaagtgcctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1058979 aagaacaaacgaccatatacaacaaggtctgtcctattttcagctatggcattgatcccatcatttcggtcgtaacctcctgcagccaggaaagtgcctt 1058880  T
Q  218 tgaaggcctttctcatcggcaca 240  Q
    |||||||||||||||||||||||    
T  1058879 tgaaggcctttctcatcggcaca 1058857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 1071898 - 1071676
Alignment:
Q  18 agtataacctataactggatctgaagtgtagaatgtcgccctgttatacttgtttagaggagcatcaagtgcaaatctcttcggcaaatctggattagct 117  Q
    ||||||||||| ||||||||| |||  ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1071898 agtataacctagaactggatcagaaacgtaaaatgtctccctgttatacttgtttagaggagcatcaagtgcaaatctctttggcaaatctggattagct 1071799  T
Q  118 aagaacaaacgaccatatacaacaaggtctgtcctattttcagctatggcattgatcccatcatttcggtcgtaacctcctgcagccaggaaagtgcctt 217  Q
    ||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||    
T  1071798 aagaacaaacgaccatatacaactaggtctgccctgttttcagctatggcattgatcccatcatgtcggtcgtaacctcctgcaaccatgaaagtgcctt 1071699  T
Q  218 tgaaggcctttctcatcggcaca 240  Q
    |||||||||||||||| ||||||    
T  1071698 tgaaggcctttctcattggcaca 1071676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 1066171 - 1065949
Alignment:
Q  18 agtataacctataactggatctgaagtgtagaatgtcgccctgttatacttgtttagaggagcatcaagtgcaaatctcttcggcaaatctggattagct 117  Q
    ||||||||||| ||||||||| ||| ||||||| ||| |||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||    
T  1066171 agtataacctagaactggatcagaaatgtagaacgtctccctgttatatttgttcagaggagcatcaagtgcaaatctctttggtaaatctggattagct 1066072  T
Q  118 aagaacaaacgaccatatacaacaaggtctgtcctattttcagctatggcattgatcccatcatttcggtcgtaacctcctgcagccaggaaagtgcctt 217  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||    
T  1066071 aagaacaaacgaccatatacaacaaggtctgccctgttttcagctatggcattgatcccatcatgtcggtcgtaacctcctgcaaccatgaaagtgcctt 1065972  T
Q  218 tgaaggcctttctcatcggcaca 240  Q
    |||||||||||||||| ||||||    
T  1065971 tgaaggcctttctcattggcaca 1065949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 1034168 - 1033948
Alignment:
Q  19 gtataacctataactggatctgaagtgtagaatgtcgccctgttatacttgtttagaggagcatcaagtgcaaatctcttcggcaaatctggattagcta 118  Q
    |||||||||| ||| ||||| ||||||||||||||| |||||||||| || || |||||||| |  ||||||||||||||||||||||||||||| ||||    
T  1034168 gtataacctacaaccggatcagaagtgtagaatgtctccctgttatatttattgagaggagcgtttagtgcaaatctcttcggcaaatctggattcgcta 1034069  T
Q  119 agaacaaacgaccatatacaacaaggtctgtcctattttcagctatggcattgatcccatcatttcggtcgtaacctcctgcagccaggaaagtgccttt 218  Q
    |||||||||||||||| |||||||| |||| |||||| || ||||| |||||||||||||| | || ||| |||||||| ||| ||| |||||| || ||    
T  1034068 agaacaaacgaccataaacaacaagatctgccctattatctgctatagcattgatcccatcttgtctgtcataacctcccgcaaccatgaaagtaccatt 1033969  T
Q  219 gaaggcctttctcatcggcac 239  Q
    ||| ||||||||||| |||||    
T  1033968 gaaagcctttctcatgggcac 1033948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 34 - 239
Target Start/End: Complemental strand, 1044540 - 1044335
Alignment:
Q  34 ggatctgaagtgtagaatgtcgccctgttatacttgtttagaggagcatcaagtgcaaatctcttcggcaaatctggattagctaagaacaaacgaccat 133  Q
    ||||| ||| ||||||||||| |||| ||||||||||| |||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  1044540 ggatcagaaatgtagaatgtctccctattatacttgttgagaggagcattaagtgcaaatctctttggcaaatctggatttgctaagaacaaacgaccat 1044441  T
Q  134 atacaacaaggtctgtcctattttcagctatggcattgatcccatcatttcggtcgtaacctcctgcagccaggaaagtgcctttgaaggcctttctcat 233  Q
    | || ||||| |||| | | ||||||||||| |||| |||||| || | || ||| || ||||||||||||| ||||| ||| ||||| |||||||||||    
T  1044440 aaactacaagatctgccttgttttcagctatagcatcgatcccgtcttgtctgtcatagcctcctgcagccatgaaagagccattgaaagcctttctcat 1044341  T
Q  234 cggcac 239  Q
     |||||    
T  1044340 tggcac 1044335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 1053814 - 1053653
Alignment:
Q  18 agtataacctataactggatctgaagtgtagaatgtcgccctgttatacttgtttagaggagcatcaagtgcaaatctcttcggcaaatctggattagct 117  Q
    ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||| |||||||||| ||||||||||||||| || ||||||||||||| |    
T  1053814 agtataacctataactggatcagaagtgtagaatgtctccctattatacttgttaagaggagcattaagtgcaaatctctttggtaaatctggattagat 1053715  T
Q  118 aagaacaaacgaccatatacaacaaggtctgtcctattttcagctatggcattgatcccatc 179  Q
    | |||||||||||||||  ||| ||| |||| ||||||||||||||| |||||||| |||||    
T  1053714 atgaacaaacgaccataagcaataagatctgccctattttcagctatagcattgattccatc 1053653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 1047141 - 1046984
Alignment:
Q  19 gtataacctataactggatctgaagtgtagaatgtcgccctgttatacttgtttagaggagcatcaagtgcaaatctcttcggcaaatctggattagcta 118  Q
    |||||||| | ||||||||| |||||| |||||||| || | |||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||    
T  1047141 gtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgtttaggggagcattaagtgcaaatctctttggcaaatctggattagcta 1047042  T
Q  119 agaacaaacgaccatatacaacaaggtctgtcctattttcagctatggcattgatccc 176  Q
     ||| |||||  | ||  ||||||| |||  ||||||||||||||| |||||||||||    
T  1047041 tgaataaacggtcgtaagcaacaagatctaccctattttcagctatagcattgatccc 1046984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 1640388 - 1640548
Alignment:
Q  19 gtataacctataactggatctgaagtgtagaatgtcgccctgttatacttgtttagaggagcatcaagtgcaaatctcttcggcaaatctggattagcta 118  Q
    |||||||| | ||| ||||| || |||||||||||  ||| |||||||||||| ||||||||||| || || |||||||| || ||||||||||||| ||    
T  1640388 gtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcatcgagcgcgaatctctttggtaaatctggattagata 1640487  T
Q  119 agaacaaacgaccatatacaacaaggtctgtcctattttcagctatggcattgatcccatc 179  Q
      ||||| ||||||||  ||||||| |||||| |||||||| |||||||||  ||||||||    
T  1640488 taaacaagcgaccataagcaacaagatctgtcttattttcaactatggcatcaatcccatc 1640548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 170
Target Start/End: Complemental strand, 65937 - 65854
Alignment:
Q  87 tgcaaatctcttcggcaaatctggattagctaagaacaaacgaccatatacaacaaggtctgtcctattttcagctatggcatt 170  Q
    |||||||||||| ||||||| |||||||||||||||| |||||||||| |||||||| |||| | ||||||| ||||| |||||    
T  65937 tgcaaatctctttggcaaatttggattagctaagaacgaacgaccataaacaacaagatctgccttattttctgctatagcatt 65854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 12121338 - 12121399
Alignment:
Q  87 tgcaaatctcttcggcaaatctggattagctaagaacaaacgaccatatacaacaaggtctg 148  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  12121338 tgcaaatctcattggcaaatctggattagctaagaacaaacgaccataaacaacaagatctg 12121399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University