View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7043_low_23 (Length: 228)
Name: NF7043_low_23
Description: NF7043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7043_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 47070186 - 47070393
Alignment:
| Q |
15 |
aaaaacaacttgaataggatctgactgagtgactgtgagaaaggcattaagtttgcggtacaatttcgaatctttacaaaaagaattttccactaatggt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47070186 |
aaaaacaacttgaataggatctgactgagtgactgtgagaaaggcattaagtttgcggtacaatttcgaatctttacaaaaagaattttccactaatggt |
47070285 |
T |
|
| Q |
115 |
gatattaagtttctgaggta----attcactatgcgacctttggttgaaaaggtttaatgagaaaaggaac-aaatgacctctaatatattgtatatatg |
209 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47070286 |
gatattaagtttctgaggtacactattcactatgcgacctttggttgaaaaggtttaatgagaaaaggaacaaaatgacctctaatatattgtatatatg |
47070385 |
T |
|
| Q |
210 |
cgtgtgtg |
217 |
Q |
| |
|
||||||| |
|
|
| T |
47070386 |
tgtgtgtg |
47070393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University