View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7043_low_3 (Length: 728)
Name: NF7043_low_3
Description: NF7043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7043_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 588; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 1 - 711
Target Start/End: Complemental strand, 7892202 - 7891491
Alignment:
| Q |
1 |
catcaacttcaactactgtcatgttgtgaccagcaagggaaaagaaaagctcatcattaagggctgcattgatgattcttagcagatatgtcttgccctt |
100 |
Q |
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| T |
7892202 |
catcaacttcaactactgtcatgttgtgaccagcaagggaaaagaaaagctcatcattaagggctgcattgatgattcttagcagatatgtcttgccctt |
7892103 |
T |
|
| Q |
101 |
ctcaacctccactgcatatgtatctagaaaaagaaattacaaattttaatgagggaaatttaggaaaacgttctagccataatttagttgaacgagagaa |
200 |
Q |
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| T |
7892102 |
ctcaacctccattgcatatgtatctagaaaaagaaattacaaattttaatgagggaaatttaggaaaacgttctagccataatt-agtcgaacgagataa |
7892004 |
T |
|
| Q |
201 |
ggtaaatctcgcaagtttgaatttacataatttctatctttgtccattgtcgtaagttttcttttgcactcacagaaggtcacttataaaaaatgacgga |
300 |
Q |
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| T |
7892003 |
ggtaaatctcgcaagtttgaatttacataatttctatctttgtccattgtcataagttttcttttgcactcacaaaaggtcacttataaaaaatgacgga |
7891904 |
T |
|
| Q |
301 |
ggtagtgcaaacttgggttattgttcttacgtttctcggaacaaggaaagagtggtcctggcttcccattgatcgtatgtgcatccgacatattgcatgg |
400 |
Q |
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| T |
7891903 |
ggtagtgcaaacttgggttattgttcttacgtttctcggaacaaggaaagagtggtcctggcttcccattgatcgtatgtgcatccgacatatttggtgg |
7891804 |
T |
|
| Q |
401 |
caactccacttgtttcccttggtttactatctcttccacatctttgtgccaccattctcctgttacacaataaaatttaaatcaccattatagtcgcatt |
500 |
Q |
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| T |
7891803 |
caaccccatttggttcccttggtttactatctcttccacatctttgtgccaccattctcctgttacacaataaaatttaaatcaccattatagtcgcatt |
7891704 |
T |
|
| Q |
501 |
gcgatattttatagtacaaatgcagccgatacaatacaacctcgatcatagtcatagacatctcaaatcttaatatttcaacttaaaacgcagccgaact |
600 |
Q |
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| T |
7891703 |
gcgatattttatagtacaaatgcagccaatacaatacaacctcgatcatagtcataggcatctcaaatcttaatgtttcaacttaaatcgcagccgaact |
7891604 |
T |
|
| Q |
601 |
tc--nnnnnnnnnnnnnngcaaatataatgaattattgaagaaattaaactgacctagcacaatttcaaattctctagctggttgtggaaaaggaaaagg |
698 |
Q |
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|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7891603 |
tcttttttttttttttttgaaaatataatgaattattgaagaaattaaactgacctagcacaatttcaaattctctagctggttgtggaaaaggaaaagg |
7891504 |
T |
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| Q |
699 |
ggttcctggttta |
711 |
Q |
| |
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| T |
7891503 |
ggttcctggttta |
7891491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 324 - 457
Target Start/End: Complemental strand, 7902198 - 7902065
Alignment:
| Q |
324 |
ttcttacgtttctcggaacaaggaaagagtggtcctggcttcccattgatcgtatgtgcatccgacatattgcatggcaactccacttgtttcccttggt |
423 |
Q |
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| T |
7902198 |
ttcttacgcttctcagaacaaggaaatagtggtcctggttttccattgatcgtatgtgcatctgacatatttggtggcaaccccaatttgttcccttgct |
7902099 |
T |
|
| Q |
424 |
ttactatctcttccacatctttgtgccaccattc |
457 |
Q |
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|| | |||||||||||||| |||| ||||||||| |
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| T |
7902098 |
tttcaatctcttccacatcattgttccaccattc |
7902065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 7902475 - 7902345
Alignment:
| Q |
1 |
catcaacttcaactactgtcatgttgtgaccagcaagggaaaagaaaagctcatcattaagggctgcattgatgattcttagcagatatgtcttgccctt |
100 |
Q |
| |
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||||||| || |||||||||||||||||||| |||| || ||||||||||||||| || ||||| || |||| |||||| | || |||||||| || | |
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| T |
7902475 |
catcaacctccactactgtcatgttgtgacccgcaatggcaaagaaaagctcatcgttgagggcagcgttgacgattctcatgaggtatgtcttcccttg |
7902376 |
T |
|
| Q |
101 |
ctcaacctccactgcatatgtatctagaaaa |
131 |
Q |
| |
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|| ||||||| |||| |||| ||||||||| |
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| T |
7902375 |
ttctacctccattgcaaatgtgtctagaaaa |
7902345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 339 - 457
Target Start/End: Complemental strand, 31214162 - 31214044
Alignment:
| Q |
339 |
gaacaaggaaagagtggtcctggcttcccattgatcgtatgtgcatccgacatattgcatggcaactcca-cttgtttcccttggtttactatctcttcc |
437 |
Q |
| |
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||||||||||| || |||||||| || |||||||||||||||||||| |||||||| || |||| ||| |||||| ||||| ||| | ||||||||| |
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| T |
31214162 |
gaacaaggaaatagcggtcctggttttccattgatcgtatgtgcatctgacatatttggtgacaaccccatattgttt-ccttgattttcaatctcttcc |
31214064 |
T |
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| Q |
438 |
acatctttgtgccaccattc |
457 |
Q |
| |
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||||| |||| ||||||||| |
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| T |
31214063 |
acatcattgttccaccattc |
31214044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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