View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7043_low_4 (Length: 633)
Name: NF7043_low_4
Description: NF7043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7043_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 159 - 616
Target Start/End: Original strand, 39849417 - 39849885
Alignment:
| Q |
159 |
atctatggcaagaattaagattcgtacatcttaaatgtgaagaagtgatgaatctcgagttcggacctaaatcctttcatatcaacattttttgcattta |
258 |
Q |
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| T |
39849417 |
atctatgtcaagaattaagatttgcacaccttaaatgtgaagaagtgatgaatctcgagttcgaacgtaaatcctttcatatcaacattttttgcatcta |
39849516 |
T |
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| Q |
259 |
tcaattgaattgtacttgtgagactaacttaaattcttttaataatgattttattgacatcctaacttatagaggttaaaatatattatggtttagacaa |
358 |
Q |
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| T |
39849517 |
tcaactgaattgtacttgtgagactaaattaaattcttttaataatgattttattgacatcctaacttatagaggttaaaatatattatgatttagacaa |
39849616 |
T |
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| Q |
359 |
aaatttcataactt-----------atcttcggtgccatttccacaagagattacttggtttagaagatatcttctcaaccttgtggtaccttgttcaac |
447 |
Q |
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| T |
39849617 |
aaatttcataacttatcatcaatacatcttcggtgccatttccacaagagattacttggtttagaagatatcttctcaaccttgtggtaccttgttcaac |
39849716 |
T |
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| Q |
448 |
acttggcatatgcttttaaaatatcaatacattttcgatgaacaaaacgtgtttgaacacaatcccaaatcaaaatgatttgagcgcggacaaaaatgac |
547 |
Q |
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| T |
39849717 |
acttggcatatgcttttaaaatatcaatacattttcgatgaacaaaacgtgtttgaacacaattccaaatcaaaatgatatgagcgcggacaaaaatgac |
39849816 |
T |
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| Q |
548 |
annnnnnncaatacttaatagggttgtattcaagcaagtgttgctcatcattgg-tttgtcaatacattt |
616 |
Q |
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| T |
39849817 |
a-ttttttcaatacttagtagggttgtattcaagcaagtgttgctcatcattggttttgtcgatacattt |
39849885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 39847625 - 39847679
Alignment:
| Q |
5 |
agtttggagttgcataaatgtgaacttgaccacaaaatcagaagaatatttgaat |
59 |
Q |
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| T |
39847625 |
agtttggagttgaataaatgtgaacttgaccacaaaatcagaagaatatttgaat |
39847679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 39848981 - 39849036
Alignment:
| Q |
76 |
ctttattgaacatattagatgttgatactttccggatatgttatgcaaagtttaat |
131 |
Q |
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| T |
39848981 |
ctttattgaacatattagacgttgatactttccggaaatgttatgcaaagtttaat |
39849036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 451
Target Start/End: Complemental strand, 28704276 - 28704236
Alignment:
| Q |
411 |
gaagatatcttctcaaccttgtggtaccttgttcaacactt |
451 |
Q |
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| T |
28704276 |
gaagataacttctcaaccttgtgttaccttgttcaacactt |
28704236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 419 - 455
Target Start/End: Original strand, 5158759 - 5158795
Alignment:
| Q |
419 |
cttctcaaccttgtggtaccttgttcaacacttggca |
455 |
Q |
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| T |
5158759 |
cttctcaaccttgtggtactttgttcgacacttggca |
5158795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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