View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7043_low_5 (Length: 568)
Name: NF7043_low_5
Description: NF7043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7043_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 12 - 549
Target Start/End: Original strand, 54263055 - 54263593
Alignment:
| Q |
12 |
atcatcatggagggtagaaaaagattgtatagtttgggtggaggactcgtcaaatttctattctgttaagtcggcttacaatgtcttaatggaagatagc |
111 |
Q |
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| T |
54263055 |
atcatcatggagggtagaaaaagattgtatagtttgggtggaggactcgtcaaatttctattctgttaagtcggcttacaatgtcttaatggaagatagc |
54263154 |
T |
|
| Q |
112 |
aatcctggatcaaccactcaacaataaggcgtagcataaattcattctgttgaaagttgtggtgtttgtgtgccaagtatttcaaaaccgtattccaatc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54263155 |
aatcctggatcaaccactcaacaataaggcgtagcataaattcattctgttgaaagttgtggtgtttgtgtgccaagtatttcaaaaccgtattccaatc |
54263254 |
T |
|
| Q |
212 |
aaagataatttatctagaagaggaatcctaagcggagattagctaaattgtgtaggtggctgtggtgatagagtcaacatcccatttattttttgaatgt |
311 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54263255 |
aaagataatttatctagaagagtaatcctaagcggagattagctaaattgtgtaggtggctgtggtgatagagtcaacatcccatttattttttgaatg- |
54263353 |
T |
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| Q |
312 |
gcnnnnnnnnnnctaaagtgtggatggatatggctaaatggctagagtgagtgtggtgtatcataataattgcaattctcatctcaattatttctctgga |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54263354 |
ctatgtttatttctaaagtgtggatggatatggctaaatggctagagtgagtgtggtgtatcataataattgcaattctcatctcaattatttctctgga |
54263453 |
T |
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| Q |
412 |
gtaagtattggaggaaaaggaacggagttgggtttaagaacaaatttggtttgcctgctagtggaggagtatttggaagtctagaaacgcac--nnnnnn |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54263454 |
gtaagtattggaggaaaaggaacggagttgggtttaagaacaaatttggtttgcctgctagtggaggagtatttggaagtctagaaacgcacaaaaaaaa |
54263553 |
T |
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| Q |
510 |
nnnnttcaggataaaaatgtgtcgttggacgcgattgcag |
549 |
Q |
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| T |
54263554 |
aaaattcaggataaaaatgtgtcgttggacgcgattgcag |
54263593 |
T |
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