View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7043_low_6 (Length: 534)
Name: NF7043_low_6
Description: NF7043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7043_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 179 - 526
Target Start/End: Complemental strand, 27657692 - 27657334
Alignment:
| Q |
179 |
tagatactagaaatctctattatagatattattcaaattatcataaatgctg-----------tccgttgcttttctcaccattgccatctatagctagt |
267 |
Q |
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| T |
27657692 |
tagaaactagaaatctctattatagatattattcaaattatcataaatgttgaatatgaaatgtgtgttgcttttctcaccattgccatctatagctagt |
27657593 |
T |
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| Q |
268 |
aagaattgataggtatccaggactcaaggtagtaggtctaagcttagtggtaaatgtctctattagagctacaatgcaatatacaagagctatcctctgc |
367 |
Q |
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| T |
27657592 |
aaaaatggataggtatccaggactcaaggttgtaggtctaagcttagtggtaaatgtctctattagagctacaatgcaatatacaagagctatcctctgc |
27657493 |
T |
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| Q |
368 |
attgaaacacaatacacaaaataagagttatatattcaagaattgaattattgagaattttaacatggtgctttaattaggcttgtatagattaattcaa |
467 |
Q |
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| T |
27657492 |
attgaaacacaatacacaaaataagagttatatattcaagaattgaattattgagaattttaacatggtgctttaattaggcttgtatagattaattcaa |
27657393 |
T |
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| Q |
468 |
ttacatatataaatacctgaagaatgccacaccatctgataaatttcatgtcaactcca |
526 |
Q |
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| T |
27657392 |
ttacatatataaatacctgaagaatgccacaccatctgataaatttcatgtcaactcca |
27657334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 9 - 176
Target Start/End: Complemental strand, 27657884 - 27657717
Alignment:
| Q |
9 |
atacacatagtgagagattaattactgtgtatctttttaatttggaactgttgtaatccacaaaactccaatctggaacgtagaggctgaaagtagtgac |
108 |
Q |
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| T |
27657884 |
atacacatagtgagagattaattactgtgtatctttttaatttggaactgttataatccacaaaactccaatctggaacgtagaggctgaaagtagtgac |
27657785 |
T |
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| Q |
109 |
catgtaaataacaaatgctacaaaccctccaagcctatatatgtaacacatacaaattaatgtgcaat |
176 |
Q |
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| T |
27657784 |
catgtaaataacaaatgccacaaaccctccaagcctatatatgtaacacatacaaattaatgtgcaat |
27657717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 242 - 368
Target Start/End: Original strand, 41309404 - 41309530
Alignment:
| Q |
242 |
tctcaccattgccatctatagctagtaagaattgataggtatccaggactcaaggtagtaggtctaagcttagtggtaaatgtctctattagagctacaa |
341 |
Q |
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| T |
41309404 |
tctcaccattgccatttataggcagtgaaaatggctatgcgtccgggactcaaggtagtgggtctaagcttggtggtaaatgtctctattagagccacaa |
41309503 |
T |
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| Q |
342 |
tgcaatatacaagagctatcctctgca |
368 |
Q |
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| T |
41309504 |
tacaatatacaagggctattctctgca |
41309530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 368
Target Start/End: Original strand, 41324011 - 41324137
Alignment:
| Q |
242 |
tctcaccattgccatctatagctagtaagaattgataggtatccaggactcaaggtagtaggtctaagcttagtggtaaatgtctctattagagctacaa |
341 |
Q |
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| T |
41324011 |
tctcaccattgccatttataggcagtgaaaatggctatgcgtccaggcctcaaggtagtgggtctaagcttggtggtaaatgtctctattagagccacaa |
41324110 |
T |
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| Q |
342 |
tgcaatatacaagagctatcctctgca |
368 |
Q |
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| T |
41324111 |
tacaatatactagtgctattctctgca |
41324137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 482 - 526
Target Start/End: Original strand, 41309612 - 41309656
Alignment:
| Q |
482 |
acctgaagaatgccacaccatctgataaatttcatgtcaactcca |
526 |
Q |
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| T |
41309612 |
acctggagaatgccacaccatctgataaatttcatgttaactcca |
41309656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 145
Target Start/End: Original strand, 41323847 - 41323921
Alignment:
| Q |
71 |
aaactccaatctggaacgtagaggctgaaagtagtgaccatgtaaataacaaatgctacaaaccctccaagccta |
145 |
Q |
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| T |
41323847 |
aaactccaatcaggaacgtagagggtgaaagttgtgatcatgtaaatgagaaatgccaaaaagcctccaaaccta |
41323921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 481 - 526
Target Start/End: Original strand, 41324234 - 41324279
Alignment:
| Q |
481 |
tacctgaagaatgccacaccatctgataaatttcatgtcaactcca |
526 |
Q |
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| T |
41324234 |
tacctgtagaatgccacaccatctaataaatttcatgtcgactcca |
41324279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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