View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7043_low_8 (Length: 472)

Name: NF7043_low_8
Description: NF7043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7043_low_8
NF7043_low_8
[»] chr4 (8 HSPs)
chr4 (6-454)||(6310199-6310651)
chr4 (55-128)||(5902459-5902533)
chr4 (63-110)||(43028084-43028131)
chr4 (68-128)||(47806391-47806452)
chr4 (62-110)||(12728560-12728608)
chr4 (68-110)||(5627105-5627147)
chr4 (60-110)||(41476246-41476296)
chr4 (249-299)||(45761001-45761051)
[»] chr5 (16 HSPs)
chr5 (62-128)||(5856278-5856345)
chr5 (67-129)||(734612-734675)
chr5 (56-128)||(3945011-3945084)
chr5 (68-128)||(14000944-14001005)
chr5 (64-110)||(8545169-8545215)
chr5 (56-110)||(40693152-40693206)
chr5 (68-128)||(1135263-1135324)
chr5 (56-124)||(33857931-33858000)
chr5 (65-128)||(18282666-18282730)
chr5 (63-110)||(33761441-33761488)
chr5 (68-110)||(5728503-5728545)
chr5 (67-131)||(20906009-20906073)
chr5 (66-128)||(11968594-11968658)
chr5 (65-128)||(33322348-33322412)
chr5 (56-115)||(41863902-41863962)
chr5 (62-102)||(43222462-43222502)
[»] chr3 (11 HSPs)
chr3 (62-128)||(34995353-34995420)
chr3 (71-131)||(40940732-40940793)
chr3 (56-110)||(38374087-38374140)
chr3 (183-229)||(46940921-46940967)
chr3 (68-128)||(66106-66167)
chr3 (57-110)||(1148917-1148970)
chr3 (65-124)||(39199009-39199069)
chr3 (65-117)||(53995125-53995176)
chr3 (68-110)||(49819100-49819142)
chr3 (88-128)||(21594360-21594401)
chr3 (56-128)||(47410352-47410425)
[»] chr8 (9 HSPs)
chr8 (64-128)||(45537634-45537699)
chr8 (62-128)||(45521624-45521691)
chr8 (64-128)||(9007522-9007587)
chr8 (56-128)||(29773219-29773292)
chr8 (175-229)||(8540520-8540574)
chr8 (63-110)||(8137487-8137534)
chr8 (80-131)||(24314227-24314278)
chr8 (62-127)||(3513556-3513622)
chr8 (265-298)||(14545858-14545891)
[»] chr6 (1 HSPs)
chr6 (68-131)||(33007894-33007958)
[»] chr2 (11 HSPs)
chr2 (68-131)||(25637114-25637178)
chr2 (65-113)||(11090276-11090324)
chr2 (62-110)||(20155242-20155290)
chr2 (56-110)||(8785352-8785406)
chr2 (68-110)||(21526255-21526297)
chr2 (69-110)||(6786586-6786627)
chr2 (62-117)||(31126556-31126612)
chr2 (68-110)||(12541630-12541672)
chr2 (56-125)||(38502381-38502451)
chr2 (56-124)||(741128-741197)
chr2 (65-124)||(740451-740511)
[»] scaffold0265 (1 HSPs)
scaffold0265 (67-110)||(10042-10085)
[»] chr7 (5 HSPs)
chr7 (63-110)||(8721399-8721446)
chr7 (62-131)||(24862588-24862658)
chr7 (63-107)||(28069481-28069525)
chr7 (56-110)||(16840655-16840710)
chr7 (69-110)||(30248270-30248311)
[»] chr1 (8 HSPs)
chr1 (67-110)||(21822724-21822767)
chr1 (65-110)||(38190636-38190681)
chr1 (65-110)||(49840201-49840246)
chr1 (62-131)||(12174509-12174579)
chr1 (69-129)||(6732073-6732134)
chr1 (65-110)||(38190561-38190606)
chr1 (56-104)||(6160296-6160344)
chr1 (62-110)||(9848503-9848551)


Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 6 - 454
Target Start/End: Complemental strand, 6310651 - 6310199
Alignment:
Q  6 tttcgtgttagtctatccgctttttatactgtgttaattaatgtgtatac--tacgagcaatagtttttatgaaatttttatcaaaattaatttgatttt 103  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||   ||| ||||||||| ||||||||| ||||||||||||||||||||||||    
T  6310651 tttcgtgtttgtctatccgctttttatattgtgttaattaatgtgtatatattacaagcaatagtatttatgaaacttttatcaaaattaatttgatttt 6310552  T
Q  104 gattaaattataggcatagataatatatgtcttatatactataagttcgagttcaacacttttcgaagtatttttctatgttcataaatgttatgtttac 203  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  6310551 gattaaattataggcatagataatatatgtcttatacactataagttcgagttcaacacttttcgaagtatttttctatgctcataaatgttatatttac 6310452  T
Q  204 gaaaattgattttattatccaaaaaggcataaggcat---agcagaacttgttatccgtttgctttttattaatgtgtaattaattcttaatatataaat 300  Q
    ||||||||||||||||||||||||||| ||||| |||   |||||| ||| ||||||| || ||||||||||||||||||||||| ||||||||||||||    
T  6310451 gaaaattgattttattatccaaaaaggtataagacatagcagcagagcttattatccgcttactttttattaatgtgtaattaatccttaatatataaat 6310352  T
Q  301 gattagtttaggacattaaacaatgttagaatctcatgaaagaatgttataagctcatgacacaataatttgttaccaaatagacacatgcgagcctata 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  6310351 gattagtttaggacattaaacaatgttagaatctcatgaaagaatgttataagctcatgacacaataa-ttgttaccaaatagacacatgcgagcttata 6310253  T
Q  401 gctataagctatctaacagacgcaactttgttttagaatcacacaaactcctac 454  Q
    |||||||||||||||||| | |||||| |||||||||||||| |||||||||||    
T  6310252 gctataagctatctaacacaggcaactgtgttttagaatcacgcaaactcctac 6310199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 5902533 - 5902459
Alignment:
Q  55 ctacgagcaatagtttttatgaaatttttatcaaaattaatttgattttgatt-aaattataggcatagataata 128  Q
    |||||| ||||||||||||||||||||| || ||||||||||||||||||||| ||||||||   ||||||||||    
T  5902533 ctacgaacaatagtttttatgaaattttgattaaaattaatttgattttgattgaaattataaatatagataata 5902459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 43028084 - 43028131
Alignment:
Q  63 aatagtttttatgaaatttttatcaaaattaatttgattttgattaaa 110  Q
    |||||||||||||||||||| || ||||||| ||||||||||||||||    
T  43028084 aatagtttttatgaaattttgattaaaattattttgattttgattaaa 43028131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 47806391 - 47806452
Alignment:
Q  68 tttttatgaaatttttatcaaaattaatttgattttgatt-aaattataggcatagataata 128  Q
    ||||||||||||||| || ||||||| ||||||||||||| |||||||||| ||| ||||||    
T  47806391 tttttatgaaattttaattaaaattattttgattttgattaaaattataggtataaataata 47806452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 12728608 - 12728560
Alignment:
Q  62 caatagtttttatgaaatttttatcaaaattaatttgattttgattaaa 110  Q
    ||||||||||||||||||||  || ||||||||||||||||| ||||||    
T  12728608 caatagtttttatgaaatttcgattaaaattaatttgattttaattaaa 12728560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 5627105 - 5627147
Alignment:
Q  68 tttttatgaaatttttatcaaaattaatttgattttgattaaa 110  Q
    ||||||||||||||| || ||||||| ||||||||||||||||    
T  5627105 tttttatgaaattttaattaaaattattttgattttgattaaa 5627147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 41476296 - 41476246
Alignment:
Q  60 agcaatagtttttatgaaatttttatcaaaattaatttgattttgattaaa 110  Q
    |||||||  |||||||||||||| || ||||||||||| ||||||||||||    
T  41476296 agcaataccttttatgaaattttgattaaaattaatttaattttgattaaa 41476246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 299
Target Start/End: Original strand, 45761001 - 45761051
Alignment:
Q  249 ttgttatccgtttgctttttattaatgtgtaattaattcttaatatataaa 299  Q
    |||||| ||| || ||||||||| ||||||||||||| |||||||||||||    
T  45761001 ttgttacccgcttactttttattcatgtgtaattaatccttaatatataaa 45761051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 5856278 - 5856345
Alignment:
Q  62 caatagtttttatgaaatttttatcaaaattaatttgattttgatt-aaattataggcatagataata 128  Q
    ||||||||||||| ||||||| ||||| |||||||||||||||||| |||||||||| ||||||||||    
T  5856278 caatagtttttataaaattttgatcaagattaatttgattttgattaaaattataggtatagataata 5856345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 734675 - 734612
Alignment:
Q  67 gtttttatgaaatttttatcaaaattaatttgattttgattaaa-ttataggcatagataatat 129  Q
    |||||||||||||||| || |||||||||||||||||||||||| ||||||| ||| |||||||    
T  734675 gtttttatgaaattttgattaaaattaatttgattttgattaaagttataggtataaataatat 734612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 3945011 - 3945084
Alignment:
Q  56 tacgagcaatagtttttatgaaatttttatcaaaattaatttgattttgat-taaattataggcatagataata 128  Q
    ||||| ||||||||||||||||||||| || ||||||| ||||||||||||  |||| ||||| ||||||||||    
T  3945011 tacgaacaatagtttttatgaaattttgattaaaattattttgattttgatcaaaatgataggtatagataata 3945084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 14000944 - 14001005
Alignment:
Q  68 tttttatgaaatttttatcaaaattaatttgattttgatt-aaattataggcatagataata 128  Q
    ||||||| ||||||  || ||||||||||||||||||||| |||||||||||||||||||||    
T  14000944 tttttataaaatttcgattaaaattaatttgattttgattaaaattataggcatagataata 14001005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 8545215 - 8545169
Alignment:
Q  64 atagtttttatgaaatttttatcaaaattaatttgattttgattaaa 110  Q
    ||||||||||||||||||| || ||||||||||||||||| ||||||    
T  8545215 atagtttttatgaaattttgattaaaattaatttgattttaattaaa 8545169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 40693152 - 40693206
Alignment:
Q  56 tacgagcaatagtttttatgaaatttttatcaaaattaatttgattttgattaaa 110  Q
    ||||| ||||| ||||||||||||||| || ||||||| ||||||||||||||||    
T  40693152 tacgaacaatattttttatgaaattttgattaaaattattttgattttgattaaa 40693206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 1135324 - 1135263
Alignment:
Q  68 tttttatgaaatttttatcaaaattaatttgattttgatt-aaattataggcatagataata 128  Q
    ||||||||||||||| || |||||||||||||||| |||| |||||||| | ||||||||||    
T  1135324 tttttatgaaattttgattaaaattaatttgatttagattaaaattatatgtatagataata 1135263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 33858000 - 33857931
Alignment:
Q  56 tacgagcaatagtttttatgaaatttttatcaaaattaatttgattttgatt-aaattataggcatagat 124  Q
    ||||| ||||| ||||||||||||| | || ||||||| ||||||||||||| |||||||||| ||||||    
T  33858000 tacgaacaataatttttatgaaattatgattaaaattattttgattttgattaaaattataggtatagat 33857931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 18282666 - 18282730
Alignment:
Q  65 tagtttttatgaaatttttatcaaaattaatttgattttgattaa-attataggcatagataata 128  Q
    |||||| ||||||||||| ||  |||||||||| ||||||||||| |||||||| ||||||||||    
T  18282666 tagtttctatgaaattttgatttaaattaatttaattttgattaacattataggtatagataata 18282730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 33761488 - 33761441
Alignment:
Q  63 aatagtttttatgaaatttttatcaaaattaatttgattttgattaaa 110  Q
    ||||| |||||||||||||| || ||||||| ||||||||||||||||    
T  33761488 aatagcttttatgaaattttaattaaaattattttgattttgattaaa 33761441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 5728503 - 5728545
Alignment:
Q  68 tttttatgaaatttttatcaaaattaatttgattttgattaaa 110  Q
    ||||||||||||||| || ||||||||||||||||| ||||||    
T  5728503 tttttatgaaattttgattaaaattaatttgattttaattaaa 5728545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 20906073 - 20906009
Alignment:
Q  67 gtttttatgaaatttttatcaaaattaatttgattttgatt-aaattataggcatagataatatat 131  Q
    |||||||||||||||| |  ||||||||||||||||| ||| ||||||| || |||||||||||||    
T  20906073 gtttttatgaaattttgaataaaattaatttgatttttattaaaattat-ggtatagataatatat 20906009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 11968658 - 11968594
Alignment:
Q  66 agtttttatgaaatttttatcaaaatta-atttgattttga-ttaaattataggcatagataata 128  Q
    |||||||||||||||||||| |||||||  ||| ||||||| |||||||||||  ||||||||||    
T  11968658 agtttttatgaaatttttatgaaaattattttttattttgatttaaattatagatatagataata 11968594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 33322412 - 33322348
Alignment:
Q  65 tagtttttatgaaatttttatcaaaattaatttgattttgatt-aaattataggcatagataata 128  Q
    |||||||||||||||||| || | |||||||| |||||| ||| |||||||||| |||| |||||    
T  33322412 tagtttttatgaaattttgattacaattaattagattttaattaaaattataggtataggtaata 33322348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 41863902 - 41863962
Alignment:
Q  56 tacgagcaatagtttttatgaaatttttatcaaaattaatttgattttga-ttaaattata 115  Q
    ||||| ||||| ||||||||||||||| || || |||| ||||||||||| ||||||||||    
T  41863902 tacgaacaataatttttatgaaattttgattaatattattttgattttgatttaaattata 41863962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 43222502 - 43222462
Alignment:
Q  62 caatagtttttatgaaatttttatcaaaattaatttgattt 102  Q
    ||||||||||||||||| ||| || ||||||||||||||||    
T  43222502 caatagtttttatgaaactttgattaaaattaatttgattt 43222462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 34995353 - 34995420
Alignment:
Q  62 caatagtttttatgaaatttttatcaaaattaatttgattttgatt-aaattataggcatagataata 128  Q
    |||||| |||||||||||||| || ||||||||||||||||||||| |||||||||| ||||||||||    
T  34995353 caatagcttttatgaaattttgattaaaattaatttgattttgattaaaattataggtatagataata 34995420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 40940793 - 40940732
Alignment:
Q  71 ttatgaaatttttatcaaaattaatttgattttgatt-aaattataggcatagataatatat 131  Q
    |||| |||||||||| |||||||||||||||| |||| |||||||||| |||||||||||||    
T  40940793 ttattaaatttttattaaaattaatttgatttggattaaaattataggtatagataatatat 40940732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 38374087 - 38374140
Alignment:
Q  56 tacgagcaatagtttttatgaaatttttatcaaaattaatttgattttgattaaa 110  Q
    ||||| |||||||||| |||||||||| || ||||||||||||||||||||||||    
T  38374087 tacgaacaatagtttt-atgaaattttgattaaaattaatttgattttgattaaa 38374140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 46940921 - 46940967
Alignment:
Q  183 gttcataaatgttatgtttacgaaaattgattttattatccaaaaag 229  Q
    |||||| |||||| |||||||||||||||||||| ||||||||||||    
T  46940921 gttcatgaatgttgtgtttacgaaaattgattttgttatccaaaaag 46940967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 66167 - 66106
Alignment:
Q  68 tttttatgaaatttttatcaaaattaatttgattttga-ttaaattataggcatagataata 128  Q
    ||||||||||||||| || ||||||||||||||||| | |||||||||||| ||||| ||||    
T  66167 tttttatgaaattttgattaaaattaatttgattttcatttaaattataggtatagagaata 66106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 1148970 - 1148917
Alignment:
Q  57 acgagcaatagtttttatgaaatttttatcaaaattaatttgattttgattaaa 110  Q
    |||| ||||||||||||||||||||| || || |||| ||||||||||||||||    
T  1148970 acgaacaatagtttttatgaaattttgattaacattattttgattttgattaaa 1148917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 39199009 - 39199069
Alignment:
Q  65 tagtttttatgaaatttttatcaaaattaatttgattttgatt-aaattataggcatagat 124  Q
    |||||||||||| ||||| || ||||||| ||||||||||||| |||||||||| ||||||    
T  39199009 tagtttttatgacattttgattaaaattattttgattttgattaaaattataggtatagat 39199069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 53995125 - 53995176
Alignment:
Q  65 tagtttttatgaaatttttatcaaaattaatttgattttgattaaattatagg 117  Q
    |||||||||||||||||| || ||||||| ||||||||||| |||||||||||    
T  53995125 tagtttttatgaaattttgattaaaattattttgattttga-taaattatagg 53995176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 49819142 - 49819100
Alignment:
Q  68 tttttatgaaatttttatcaaaattaatttgattttgattaaa 110  Q
    |||| |||||||||| || ||||||||||||||||||||||||    
T  49819142 ttttcatgaaattttaattaaaattaatttgattttgattaaa 49819100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 21594360 - 21594401
Alignment:
Q  88 aaattaatttgattttgattaaa-ttataggcatagataata 128  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  21594360 aaattaatttgattttgattaaagttataggcctagataata 21594401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 47410352 - 47410425
Alignment:
Q  56 tacgagcaatagtttttatgaaatttttatcaaaattaatttgattttgatt-aaattataggcatagataata 128  Q
    ||||| ||||| ||||||||||||||| ||  |||||| ||| ||||||||| |||||||||| ||| ||||||    
T  47410352 tacgaacaataatttttatgaaattttgattgaaattattttaattttgattaaaattataggtataaataata 47410425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 45537634 - 45537699
Alignment:
Q  64 atagtttttatgaaatttttatcaaaattaatttgattttgatt-aaattataggcatagataata 128  Q
    ||||||||||||||||||| || ||||||||||||||||||||| ||| |||||| ||||||||||    
T  45537634 atagtttttatgaaattttgatgaaaattaatttgattttgattaaaaatataggtatagataata 45537699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 45521691 - 45521624
Alignment:
Q  62 caatagtttttatgaaatttttatcaaaattaatttgattttgatt-aaattataggcatagataata 128  Q
    |||||||||||||||||| || || ||||||| ||||||||||||| |||||||||| ||||||||||    
T  45521691 caatagtttttatgaaatattgattaaaattattttgattttgattaaaattataggtatagataata 45521624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 9007587 - 9007522
Alignment:
Q  64 atagtttttatgaaatttttatcaaaattaatttgattttgatt-aaattataggcatagataata 128  Q
    ||||||||||||||||| | || |||| |||||||||||||||| |||||||||| ||||||||||    
T  9007587 atagtttttatgaaattctgattaaaactaatttgattttgattaaaattataggtatagataata 9007522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 29773219 - 29773292
Alignment:
Q  56 tacgagcaatagtttttatgaaatttttatcaaaattaatttgattttgatt-aaattataggcatagataata 128  Q
    ||||| ||||| ||||| | || ||||||| ||||||||||||||||||||| |||||||||| ||||||||||    
T  29773219 tacgaacaataatttttctcaattttttattaaaattaatttgattttgattaaaattataggtatagataata 29773292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 8540520 - 8540574
Alignment:
Q  175 ttttctatgttcataaatgttatgtttacgaaaattgattttattatccaaaaag 229  Q
    |||||||| |||||||||||| |||||||||  ||||||||||| ||||||||||    
T  8540520 ttttctattttcataaatgttgtgtttacgatgattgattttatcatccaaaaag 8540574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 8137487 - 8137534
Alignment:
Q  63 aatagtttttatgaaatttttatcaaaattaatttgattttgattaaa 110  Q
    |||||||||||||||||||| || ||||||| ||||||||| ||||||    
T  8137487 aatagtttttatgaaattttgattaaaattattttgatttttattaaa 8137534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 24314278 - 24314227
Alignment:
Q  80 ttttatcaaaattaatttgattttgattaaattataggcatagataatatat 131  Q
    |||||| ||||||  ||| ||||||||||||||||||| |||||||||||||    
T  24314278 ttttattaaaattgttttaattttgattaaattataggtatagataatatat 24314227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 3513622 - 3513556
Alignment:
Q  62 caatagtttttatgaaatttttatcaaaattaatttgattttgatt-aaattataggcatagataat 127  Q
    ||||| |||| |||||||||| || ||||||| ||||||||||||| |||||||| ||||| |||||    
T  3513622 caataattttaatgaaattttgattaaaattattttgattttgattaaaattatatgcatacataat 3513556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 298
Target Start/End: Original strand, 14545858 - 14545891
Alignment:
Q  265 ttttattaatgtgtaattaattcttaatatataa 298  Q
    ||||||| ||||||||||||||||||||||||||    
T  14545858 ttttattcatgtgtaattaattcttaatatataa 14545891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 68 - 131
Target Start/End: Complemental strand, 33007958 - 33007894
Alignment:
Q  68 tttttatgaaatttttatcaaaattaatttgattttgatt-aaattataggcatagataatatat 131  Q
    ||||||||||||||| || ||||||||||||||||||||| |||||||||  |||||||||||||    
T  33007958 tttttatgaaattttgattaaaattaatttgattttgattaaaattatagatatagataatatat 33007894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 25637114 - 25637178
Alignment:
Q  68 tttttatgaaatttttatcaaaattaatttgattttgatt-aaattataggcatagataatatat 131  Q
    ||||||||||||||| || ||||||||||||||||||||| ||||| |||| |||||||||||||    
T  25637114 tttttatgaaattttgattaaaattaatttgattttgattaaaattgtaggtatagataatatat 25637178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 11090324 - 11090276
Alignment:
Q  65 tagtttttatgaaatttttatcaaaattaatttgattttgattaaatta 113  Q
    ||||||||||||||||||  | |||||||||||||||||||||||||||    
T  11090324 tagtttttatgaaattttgtttaaaattaatttgattttgattaaatta 11090276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 20155242 - 20155290
Alignment:
Q  62 caatagtttttatgaaatttttatcaaaattaatttgattttgattaaa 110  Q
    |||||| |||||||||||||| || ||||||||||||||||||||||||    
T  20155242 caatagcttttatgaaattttgattaaaattaatttgattttgattaaa 20155290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 8785406 - 8785352
Alignment:
Q  56 tacgagcaatagtttttatgaaatttttatcaaaattaatttgattttgattaaa 110  Q
    ||||| ||||||||||||||||||||| || ||||||| ||||||||| ||||||    
T  8785406 tacgaacaatagtttttatgaaattttgattaaaattattttgattttcattaaa 8785352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 21526255 - 21526297
Alignment:
Q  68 tttttatgaaatttttatcaaaattaatttgattttgattaaa 110  Q
    ||||||||||||||| || ||||||||||||||||||||||||    
T  21526255 tttttatgaaattttaattaaaattaatttgattttgattaaa 21526297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 6786586 - 6786627
Alignment:
Q  69 ttttatgaaatttttatcaaaattaatttgattttgattaaa 110  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  6786586 ttttatgaaattttgattaaaattaatttgattttgattaaa 6786627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 31126556 - 31126612
Alignment:
Q  62 caatagtttttatgaaatttttatcaaaattaatttgattttgatta-aattatagg 117  Q
    ||||||||||||||||||||| || ||||||| |||| ||||||||| |||||||||    
T  31126556 caatagtttttatgaaattttgattaaaattattttggttttgattacaattatagg 31126612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 12541672 - 12541630
Alignment:
Q  68 tttttatgaaatttttatcaaaattaatttgattttgattaaa 110  Q
    ||||||||||||| ||||  |||||||||||||||||||||||    
T  12541672 tttttatgaaattgttattgaaattaatttgattttgattaaa 12541630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 38502451 - 38502381
Alignment:
Q  56 tacgagcaatagtttttatgaaatttttatcaaaattaatttgattttgatt-aaattataggcatagata 125  Q
    ||||| |||| |||||||| ||||| | || ||||||| ||||||||||||| |||||||||| |||||||    
T  38502451 tacgaacaattgtttttataaaattctgattaaaattattttgattttgattaaaattataggtatagata 38502381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 741128 - 741197
Alignment:
Q  56 tacgagcaatagtttttatgaaatttttatcaaaattaatttgattttgatt-aaattataggcatagat 124  Q
    ||||| || |||||||||||||||||  || ||| ||| ||||||||||||| |||||||||| ||||||    
T  741128 tacgaacattagtttttatgaaatttcaattaaatttattttgattttgattaaaattataggtatagat 741197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 740451 - 740511
Alignment:
Q  65 tagtttttatgaaatttttatcaaaattaatttgattttgatt-aaattataggcatagat 124  Q
    |||||||||||||||||  || ||| ||| ||||||||||||| |||||||||| ||||||    
T  740451 tagtttttatgaaatttcgattaaatttattttgattttgattaaaattataggtatagat 740511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 10042 - 10085
Alignment:
Q  67 gtttttatgaaatttttatcaaaattaatttgattttgattaaa 110  Q
    |||||||||||||||| || ||||||||||||||||||||||||    
T  10042 gtttttatgaaattttgattaaaattaatttgattttgattaaa 10085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 8721399 - 8721446
Alignment:
Q  63 aatagtttttatgaaatttttatcaaaattaatttgattttgattaaa 110  Q
    |||| ||||||||||||||| || ||||||||||||||||||||||||    
T  8721399 aataatttttatgaaattttaattaaaattaatttgattttgattaaa 8721446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 24862658 - 24862588
Alignment:
Q  62 caatagtttttatgaaatttttatcaaaattaatttgattttgatt-aaattataggcatagataatatat 131  Q
    ||||||||||||| ||||||| || |||||| ||| |||||||||| |||||||||| ||| |||||||||    
T  24862658 caatagtttttataaaattttaattaaaattgattcgattttgattaaaattataggtataaataatatat 24862588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 28069481 - 28069525
Alignment:
Q  63 aatagtttttatgaaatttttatcaaaattaatttgattttgatt 107  Q
    |||||||||||||||| ||| || |||||||||||||||||||||    
T  28069481 aatagtttttatgaaactttcattaaaattaatttgattttgatt 28069525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 16840710 - 16840655
Alignment:
Q  56 tacgagcaatagtttttatgaaatttttatcaaaattaa-tttgattttgattaaa 110  Q
    ||||| ||||||||||||||||||||| || |||||||| ||||||||| ||||||    
T  16840710 tacgaacaatagtttttatgaaattttgataaaaattaattttgattttaattaaa 16840655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 30248311 - 30248270
Alignment:
Q  69 ttttatgaaatttttatcaaaattaatttgattttgattaaa 110  Q
    |||||||||||||| || ||||||| ||||||||||||||||    
T  30248311 ttttatgaaattttgattaaaattattttgattttgattaaa 30248270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 21822767 - 21822724
Alignment:
Q  67 gtttttatgaaatttttatcaaaattaatttgattttgattaaa 110  Q
    |||||||||||||||| || ||||||||||||||||||||||||    
T  21822767 gtttttatgaaattttgattaaaattaatttgattttgattaaa 21822724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 38190636 - 38190681
Alignment:
Q  65 tagtttttatgaaatttttatcaaaattaatttgattttgattaaa 110  Q
    |||||||||||||||||| || |||||||||||||||||| |||||    
T  38190636 tagtttttatgaaattttgattaaaattaatttgattttgtttaaa 38190681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 49840246 - 49840201
Alignment:
Q  65 tagtttttatgaaatttttatcaaaattaatttgattttgattaaa 110  Q
    |||||||||||||||||| || ||||||| ||||||||||||||||    
T  49840246 tagtttttatgaaattttgattaaaattattttgattttgattaaa 49840201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 12174509 - 12174579
Alignment:
Q  62 caatagtttttatgaaatttttatcaaaattaatttgatttt-gattaaattataggcatagataatatat 131  Q
    ||||||||||||| ||||||| || ||||||| ||||||||| | | ||| |||||| |||||||||||||    
T  12174509 caatagtttttatcaaattttgattaaaattattttgattttagttaaaaatataggtatagataatatat 12174579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 6732073 - 6732134
Alignment:
Q  69 ttttatgaaatttttatcaaaattaatttgattttg-attaaattataggcatagataatat 129  Q
    |||||||||||||| || ||||||| |||||||||| || |||||| ||| |||||||||||    
T  6732073 ttttatgaaattttgattaaaattattttgattttgaataaaattagaggtatagataatat 6732134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 38190561 - 38190606
Alignment:
Q  65 tagtttttatgaaatttttatcaaaattaatttgattttgattaaa 110  Q
    |||||| ||||||||||| || |||||||||||||||||| |||||    
T  38190561 tagtttatatgaaattttgattaaaattaatttgattttgtttaaa 38190606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 6160344 - 6160296
Alignment:
Q  56 tacgagcaatagtttttatgaaatttttatcaaaattaatttgattttg 104  Q
    ||||| |||||||||| |||||||||| || | ||||||||||||||||    
T  6160344 tacgaacaatagttttaatgaaattttgattataattaatttgattttg 6160296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 9848551 - 9848503
Alignment:
Q  62 caatagtttttatgaaatttttatcaaaattaatttgattttgattaaa 110  Q
    ||||| ||||||||||||||| || ||||||| ||||| ||||||||||    
T  9848551 caataatttttatgaaattttgattaaaattattttgaatttgattaaa 9848503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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