View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7043_low_9 (Length: 462)
Name: NF7043_low_9
Description: NF7043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7043_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 128 - 419
Target Start/End: Complemental strand, 32849762 - 32849471
Alignment:
| Q |
128 |
gctttatgaattgtgatataacattgcttgtttgttcctcagtctcagaggtacaattaatctacacatgcaaagctctactcaggttactttaccatcg |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32849762 |
gctttatgaattgtgatataacattgcttgtttgttcctcagtctcagaggtacaattaatctacacatgcaaagctctactcaggttactttaccatct |
32849663 |
T |
|
| Q |
228 |
ctgacaaacctgacaatcgatgtttattatgctgaagtgccttccgtgaatttacttctatttggctgccaaaacattgaaattttgtatcttaaattta |
327 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32849662 |
ctgaggaacctgacaatcgatgtttattatgctgaagtggcttccgtgaatttacttctatttggctgccaaaacattgaaattttgtatcttaaattta |
32849563 |
T |
|
| Q |
328 |
ccacccaaagcttggacaaactctgcatcccaccttccttgaaaaggttgacaatctccattaagaagttgggtcgtacttcaacaaaggtt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32849562 |
ccacccaaagcttggacaaactctgcatcccaccttccttgaaaaggttgacaatctccattaagaagttgggtcgtacttcaacaaaggtt |
32849471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 32849873 - 32849779
Alignment:
| Q |
6 |
gtttcgtgttacagcgatatccaattattcaagctccctctatatatcgctcttcacttccactaacctcgtttcactcaggtaattaaaactagtata |
104 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32849873 |
gtttcctgttgcagcgatatccaattattcaagctccctctat----cgctcttcacttccactaacctcgtttcactcaggtaattaaaactagtata |
32849779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 134 - 311
Target Start/End: Complemental strand, 4412931 - 4412754
Alignment:
| Q |
134 |
tgaattgtgatataacattgcttgtttgttcctcagtctcagaggtacaattaatctacacatgcaaagctctactcaggttactttaccatcgctgaca |
233 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||| |||||||| || ||||||| ||| ||||||| | |||||||||| |||| |||| |
|
|
| T |
4412931 |
tgaattgtgatattacattacttgtttgttcctcagtctcattagtacaattgatttacacatccaaggctctacgccggttactttaacatcactgaag |
4412832 |
T |
|
| Q |
234 |
aacctgacaatcgatgtttattatgctgaagtgccttccgtgaatttacttctatttggctgccaaaacattgaaatt |
311 |
Q |
| |
|
|| ||| ||| | |||||||| |||||||||||| ||||||||||||||| |||||| | ||||||||||||| |
|
|
| T |
4412831 |
aagctggtaattaacacttattatgtggaagtgccttccttgaatttacttctatgtggctgtccaaacattgaaatt |
4412754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 134 - 320
Target Start/End: Complemental strand, 4428034 - 4427848
Alignment:
| Q |
134 |
tgaattgtgatataacattgcttgtttgttcctcagtctc-agaggtacaattaatctacacatgcaaagctctactcaggttactttaccatcgctgac |
232 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||| | || ||| || || ||||| | ||||||||||| | |||||||||| |||| |||| |
|
|
| T |
4428034 |
tgaattgtgatataatattacttgtttgttcctcagtctctatagtgaca-ttgatttacacgttcaaagctctacgccggttactttaacatcactgaa |
4427936 |
T |
|
| Q |
233 |
aaacctgacaatcgatgtttattatgctgaagtgccttccgtgaatttacttctatttggctgccaaaacattgaaattttgtatctt |
320 |
Q |
| |
|
|| ||| ||| | |||||||| |||||||||||| ||||||||||||||| |||||||| ||||||||||||| | |||||| |
|
|
| T |
4427935 |
gaagctggtaattaacacttattatgtggaagtgccttccttgaatttacttctatgtggctgcccaaacattgaaattctttatctt |
4427848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 4413697 - 4413660
Alignment:
| Q |
50 |
tatcgctcttcacttccactaacctcgtttcactcagg |
87 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
4413697 |
tatcgctcttcattcccactaacctcgtttcactcagg |
4413660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 4460614 - 4460655
Alignment:
| Q |
128 |
gctttatgaattgtgatataacattgcttgtttgttcctcag |
169 |
Q |
| |
|
||||| || |||||||||||||||| |||||||||||||||| |
|
|
| T |
4460614 |
gctttctggattgtgatataacattacttgtttgttcctcag |
4460655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University