View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7044_low_1 (Length: 420)
Name: NF7044_low_1
Description: NF7044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7044_low_1 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 19 - 420
Target Start/End: Complemental strand, 49107114 - 49106713
Alignment:
| Q |
19 |
atagaaagggcaatgtttgtagcttagagtaataaatattgtttggattaataaccatggaaattccctcaattgattgtgatgataatgtcaagtaacg |
118 |
Q |
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| T |
49107114 |
atagaaagggcaatgtttgtagcttagagtaataaatattgtttggattaataaccatggaaattccctcaattgattgtgatgataatgtcaagtaacg |
49107015 |
T |
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| Q |
119 |
gagaattttgtagcataaaagtattacaagttatgaagtaaattccctaattgtgaaagtagccttacacttttcaaactcaaaactcatagttagtata |
218 |
Q |
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| T |
49107014 |
gagaattttgtagcataaaagtattacaagttatgaagtaaattccctaattgtgaaagtagccttacacttttcaaactcaaaactcatagttagtata |
49106915 |
T |
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| Q |
219 |
attgcagactattttaatttgagatatgatacttatctcccattttgattttgattgatactggaggcattgtttcaatgttgtattcaacaatctctca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
49106914 |
attgcagactattttaatttgagatatgatacttatctcccattttgattttgattgatactggaggaattgtttcaatgttgtattcaacaatctctca |
49106815 |
T |
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| Q |
319 |
tcacatttaatatttataatgaaagtttgcagcagaaaataagtgttgagtcacgcacgggagtggtgtgtaagagccagtcacaaggtggtactgcata |
418 |
Q |
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| T |
49106814 |
tcacatttaatatttataatgaaagtttgcagcagaaaataagtgttgagtcacgcacgggagtggtgtgtaagagtcagtcacaaggtggtactgcata |
49106715 |
T |
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| Q |
419 |
ta |
420 |
Q |
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| T |
49106714 |
ta |
49106713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 92 - 243
Target Start/End: Complemental strand, 50078011 - 50077860
Alignment:
| Q |
92 |
tgattgtgatgataatgtcaagtaacggagaattttgtagcataaaagtattacaagttatgaagtaaattccctaattgtgaaagtagccttacacttt |
191 |
Q |
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| T |
50078011 |
tgattgtgatgataatgtcaagtaatagagaattttgtagcataaaagaatcacaagttctgaagtgaattccctgattatgaacgtagccttaaacttt |
50077912 |
T |
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| Q |
192 |
tcaaactcaaaactcatagttagtataattgcagactattttaatttgagat |
243 |
Q |
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| T |
50077911 |
tcaaactcaaaactcatagttagtataattgcagactattttaatttgagat |
50077860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 50112053 - 50112228
Alignment:
| Q |
19 |
atagaaagggcaatgtttgtagcttagagtaataaatattgtttggattaataaccatggaaattccctcaattgattgtgatgataatgtcaagtaacg |
118 |
Q |
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|||||||| ||||||||| ||||||| |||||||| ||||||||| ||||||||| | ||||||| |||| ||||||||||||||||||||||||| |
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| T |
50112053 |
atagaaagcgcaatgtttatagcttaaagtaataagtattgtttgaattaataacaagggaaattaactcagatgattgtgatgataatgtcaagtaaaa |
50112152 |
T |
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| Q |
119 |
gagaattttgtagcataaaagtattacaagttatgaagtaaattccctaattgtgaaagtagccttacacttttca |
194 |
Q |
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| T |
50112153 |
gagaattttgtagcataaaagaatcacaagttatgaagtgaattcccaaattgtgaacgtagccttaaactcttca |
50112228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 180; Significance: 5e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 92 - 419
Target Start/End: Complemental strand, 10796421 - 10796110
Alignment:
| Q |
92 |
tgattgtgatgataatgtcaagtaacggagaattttgtagcataaaagtattacaagttatgaagtaaattccctaattgtgaaagtagccttacacttt |
191 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||| |||||| |||||||| ||| |||| ||||||||| ||||| |
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| T |
10796421 |
tgattgtgatgataatgtcaagtaatagagaattttgtagcataaaagaatcacaagttctgaagtgaattccctgattatgaacgtagccttaaacttt |
10796322 |
T |
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| Q |
192 |
tcaaactcaaaactcatagttagtataattgcagactattttaatttgagatatgatacttatctcccattttgattttgattgatactggaggcattgt |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||| ||||||| |
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| T |
10796321 |
tcaaactcaaaactcatagttagtataattgcagactattttaatttgagatgtg-------------attttgatt----ttgatactggatgcattgt |
10796239 |
T |
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| Q |
292 |
ttcaa-tgttgtattcaacaatctctcatcacatttaatatttataatgaaagtttgcagcagaaaataagtgttgagtcacgcacgggagtggtgtgta |
390 |
Q |
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||||| ||||||||||||||||||||| |||||||||| | | ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10796238 |
ttcaattgttgtattcaacaatctctcgtcacatttaaaactgataatgaaaatttgcagcagaaaataagtggtgagtcacgcacgggagtggtgtgta |
10796139 |
T |
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| Q |
391 |
agagccagtcacaaggtggtactgcatat |
419 |
Q |
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|||| ||||||||||||| |||||||||| |
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| T |
10796138 |
agagtcagtcacaaggtgctactgcatat |
10796110 |
T |
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