View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7044_low_11 (Length: 203)
Name: NF7044_low_11
Description: NF7044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7044_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 4e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 1615049 - 1615219
Alignment:
| Q |
14 |
atgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccact |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1615049 |
atgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagt-----tgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccact |
1615143 |
T |
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| Q |
114 |
acatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatg |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1615144 |
acatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatg |
1615219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 24456036 - 24455874
Alignment:
| Q |
20 |
acaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatag |
119 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||| | || | |||||||||||||||| |||| |||||||| ||||||| ||| |
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| T |
24456036 |
acaaaggcaaagagaagaaaataaaaccgatatggtgcag-----ctggaccaca--gagaaaaatcagaacatagggaggaaaaaataccactacgtag |
24455944 |
T |
|
| Q |
120 |
cagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatg |
189 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
24455943 |
cagctgcaataccaaaacactgctgttgcattacattagtccacatgccgaaaaccagctctaaattatg |
24455874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 49234325 - 49234495
Alignment:
| Q |
14 |
atgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccact |
113 |
Q |
| |
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|||||||| ||||||||||||||||| ||||||| ||| | |||||||| |||| ||| ||| |||||||||||| |||| |||||||||||||| |
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| T |
49234325 |
atgaagaccaaggcaaagagaagaaattaaaaccaatatg-----ttgcagctggaacacaaatagacaaatcagaacacagggaggaaaaaatgccact |
49234419 |
T |
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| Q |
114 |
acatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatg |
189 |
Q |
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| ||||||||||| ||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||| |
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| T |
49234420 |
atgtagcagctgcagtaccaaaacactgctgctgcattacattagcccacatgcagaaaaccagctctaaattatg |
49234495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 49233754 - 49233924
Alignment:
| Q |
14 |
atgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccact |
113 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| ||| | |||||||| |||| ||| ||| |||||| ||||| |||| |||| ||||||||| |
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| T |
49233754 |
atgaagaccaaggcaaagagaagaaattaaaaccaatatg-----ttgcagctggaacacaaatagacaaatcaaaacacagggaggaaagaatgccact |
49233848 |
T |
|
| Q |
114 |
acatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatg |
189 |
Q |
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| ||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
49233849 |
atgtagcagctgtagtaccaaaacactgctgctgcactacattagtccacatgccgaaaaccagctctaaattatg |
49233924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 8e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 50862723 - 50862553
Alignment:
| Q |
14 |
atgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccact |
113 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||| ||| | |||||| || |||| ||| ||| |||||||||||| |||| ||||||| |||||| |
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| T |
50862723 |
atgaagaccaaggcaaagagaagaaattaaaactaatatgttgcagt-----tggaacacaaatagacaaatcagaacacagggaggaaaaaacgccact |
50862629 |
T |
|
| Q |
114 |
acatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatg |
189 |
Q |
| |
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| || |||||||| ||||||| || ||||| | ||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
50862628 |
atgtaccagctgcagtaccaaagcagtgctgatacactacattagtccacatgccgaaaatcagctctaaattatg |
50862553 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 8e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 43228276 - 43228110
Alignment:
| Q |
16 |
gaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactac |
115 |
Q |
| |
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|||||| ||||||||||||||||| ||||||||||| | ||||| ||| |||| | |||| |||||||||| | |||| ||||||| ||||| | |
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| T |
43228276 |
gaagaccaaggcaaagagaagaaagtaaaaccgatatgttgcag-----ctggaacaca--gagacaaatcagaacgcagggaggaaaaaacgccaccag |
43228184 |
T |
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| Q |
116 |
atagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatg |
189 |
Q |
| |
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||| ||||||| | | |||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| |
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| T |
43228183 |
gtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagccaactctaaattatg |
43228110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 14839311 - 14839144
Alignment:
| Q |
15 |
tgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccacta |
114 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||| | ||||| ||| |||| | |||| |||||||||| |||| ||||||| || ||| |
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| T |
14839311 |
tgaagacagaggaaaagagaagaaaataaaaccgatatgttgcag-----ctggaacaca--gagacaaatcagaacgtagggaggaaaaaactccgcta |
14839219 |
T |
|
| Q |
115 |
catagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatg |
189 |
Q |
| |
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| |||||| |||| ||||||||||| || |||||| |||||||||||| ||| |||||||||||||||| |||| |
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| T |
14839218 |
cgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaaccagctctaaactatg |
14839144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 27962379 - 27962546
Alignment:
| Q |
15 |
tgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccacta |
114 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||| | ||||| ||| |||| | |||| |||||||||| |||| ||||||| || ||| |
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| T |
27962379 |
tgaagacagaggaaaagagaagaaaataaaaccgatatgttgcag-----ctggaacaca--gagacaaatcagaacgtagggaggaaaaaactccgcta |
27962471 |
T |
|
| Q |
115 |
catagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatg |
189 |
Q |
| |
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| |||||| |||| ||||||||||| || |||||| |||||||||||| ||| |||||||||||||||| |||| |
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| T |
27962472 |
cgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaaccagctctaaactatg |
27962546 |
T |
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