View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7044_low_2 (Length: 419)
Name: NF7044_low_2
Description: NF7044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7044_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 55220595 - 55221008
Alignment:
| Q |
1 |
atagccaccctcctcttcctctacgtcactgtcgccaccgtcattggtcacaaaaaacaaactgctccatgtgacggtgttggccttttaggcgtagcat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
55220595 |
atagccaccctcctcttcctctacgtcactgtcgccaccgtcattggtcacaaaaaacaaactgctccatgtgacggtgttggccttttaggcatagcat |
55220694 |
T |
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| Q |
101 |
ggtcctttggtggcatgatttttgtccttgtctactgcactgccggtatctccggtggccacattaaccctgcggtcacattcggccttttcttggctcg |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55220695 |
ggtcctttggtggcatgatctttgtccttgtctactgcactgccggtatctccggtggccacattaaccctgcggtcacattcggccttttcttggctcg |
55220794 |
T |
|
| Q |
201 |
taaagtgtctctcataagagcggtgttatacatggtagcacagtgtttaggtgctatctgtggcgttgggttggtgaaggctttcatgaaacacccttac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
55220795 |
taaagtgtctctcataagagcggtgttatacatggtagcacagtgtttaggtgctatctgtggcgttgggttggtgaaggcattcatgaaacacccttac |
55220894 |
T |
|
| Q |
301 |
aaccacctaggcggcggtgctaactctgtagcttccggttacagcaaaggctctgccctaggtgctgaaatgatcggaacttttgtgttggtttacactg |
400 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55220895 |
aaccacctaggcggcggtgctaactttgtagcttccggttacagcaaaggctctgccctaggtgctgaaatgatcggaacttttgtgttggtttacactg |
55220994 |
T |
|
| Q |
401 |
ttttctctgctact |
414 |
Q |
| |
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|||||||||||||| |
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| T |
55220995 |
ttttctctgctact |
55221008 |
T |
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Back To:
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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 414
Target Start/End: Complemental strand, 40207173 - 40207096
Alignment:
| Q |
337 |
ggttacagcaaaggctctgccctaggtgctgaaatgatcggaacttttgtgttggtttacactgttttctctgctact |
414 |
Q |
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||||||||||||||| |||| ||||||||||||| || || || ||||| ||||| ||||||||||||||||||||| |
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| T |
40207173 |
ggttacagcaaaggcactgctttaggtgctgaaattattggtacctttgttttggtctacactgttttctctgctact |
40207096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 40835658 - 40835616
Alignment:
| Q |
104 |
cctttggtggcatgatttttgtccttgtctactgcactgccgg |
146 |
Q |
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| T |
40835658 |
cctttggtggcatgatctttgttcttgtctactgcactgccgg |
40835616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 284
Target Start/End: Original strand, 42796312 - 42796442
Alignment:
| Q |
154 |
ggtggccacattaaccctgcggtcacattcggccttttcttggctcgtaaagtgtctctcataagagcggtgttatacatggtagcacagtgtttaggtg |
253 |
Q |
| |
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||||| ||||||||||| || || ||||| || || || ||||||||||| |||||| | || ||||| | | |||||||| || ||||||||||| | |
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| T |
42796312 |
ggtggtcacattaacccagcagtgacatttgggctatttttggctcgtaaggtgtctttgatcagagcaattatgtacatggtggctcagtgtttaggag |
42796411 |
T |
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| Q |
254 |
ctatctgtggcgttgggttggtgaaggcttt |
284 |
Q |
| |
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|||| ||| ||||||||||| |||||||| |
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| T |
42796412 |
ctattgctggagttgggttggttaaggcttt |
42796442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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