View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7044_low_3 (Length: 413)
Name: NF7044_low_3
Description: NF7044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7044_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 4e-79; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 3928869 - 3929033
Alignment:
| Q |
13 |
ctgtgtggcttcttcattcctcatgtcgccagtgctgattttcttgtggccattgtatggtgatatattattgaaatagtgcaagttttagttttgaaag |
112 |
Q |
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| T |
3928869 |
ctgtgtggcttcttcattcctcctgtcgccagtgctgattttcttgtggccattgtatggtgatatattattgaaatagtgcaagttttagttttgaaag |
3928968 |
T |
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| Q |
113 |
tgattgacttgaaatctgg--tagtgtatacagttttgatagtcgattctggaactggtagagca |
175 |
Q |
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| T |
3928969 |
tgattgacttgaaatctggtatagtgtatacagttttgatagtcgattctggaactggtagagca |
3929033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 219 - 394
Target Start/End: Original strand, 3929038 - 3929213
Alignment:
| Q |
219 |
ggtaactttataccaagactgtcataatattttaacatctataactcattttgatggtactgttatattgataggaagctctagaatatagggaacgaat |
318 |
Q |
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| T |
3929038 |
ggtaactttataccaagactgtcataatattttaacatctataactcattttgatggtactgttatattgatagtaagctctagaatatagggagcgaat |
3929137 |
T |
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| Q |
319 |
cgacagtggtggaaggatggaacgacattaatcaacaggggttaaatgaaggatggacgtaaaatttgacaggatc |
394 |
Q |
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| T |
3929138 |
tgacagtggtggaaggatggaatgacattaatcaacaggcgttaactgaaggatggaagtaaaatttgacaggatc |
3929213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 3914729 - 3914802
Alignment:
| Q |
283 |
atattgataggaagctctagaatatagggaacgaatcgacagtggtggaaggatggaacgacattaatcaacag |
356 |
Q |
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| T |
3914729 |
atattgatagtaagctctaagctataggaaccaaattgacagtagcggaaggatggaacgacattaatcgacag |
3914802 |
T |
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