View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7044_low_5 (Length: 352)
Name: NF7044_low_5
Description: NF7044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7044_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 22918075 - 22917780
Alignment:
| Q |
18 |
caatgacgacacagtttcatgcactatgtggcttaaagtaacaagttccaatacatttaactcaaaacaatggcctaggcaacaatgcgcgggttagaca |
117 |
Q |
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| T |
22918075 |
caatgacaacacaactgcatgcactatgtggcttaaagtaacaagttccaatacatttaacgcaaaacaatggtctag-------------------aca |
22917995 |
T |
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| Q |
118 |
aattaagaaaagagttcaaccaaaataatcaactaagtgaaatctggatgcacaaaagtatctgattgaagtttaacccattaagaacaaaagagtaact |
217 |
Q |
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||| |||||||||||||||||| || |||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || |||| |
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| T |
22917994 |
aatcaagaaaagagttcaaccacaacaatcaactaactgaaatttggatgcacaaaagtatttgattgaagtttaacccattaagaacaaacaagcaact |
22917895 |
T |
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| Q |
218 |
aactatcagcatgcatcaattgttatccatc-aaagagttcgatatacacacagttccagcataaaattacacatagttccagcatagactacacacagt |
316 |
Q |
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||| |||| ||||||||||||||| | |||| |||||||| ||| |||||| ||||||| |||||||||||||| ||||||| |||| |||||||||||| |
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| T |
22917894 |
aaccatcaacatgcatcaattgttgttcatcaaaagagtttgatctacacaaagttccaacataaaattacacacagttccatcataaactacacacagt |
22917795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 35 - 141
Target Start/End: Original strand, 9266165 - 9266264
Alignment:
| Q |
35 |
catgcactatgtggcttaaagtaacaagttccaatacatttaactcaaaacaatggcctaggcaacaatgcgcgggttagacaaattaagaaaagagttc |
134 |
Q |
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| T |
9266165 |
catgcactatgtggcttaaagtaacaagttccaatacatttaactcaaaacaatggcctaggcaaca-------ggttagacaaattaagaaaagagttc |
9266257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 9266049 - 9266130
Alignment:
| Q |
20 |
atgacgacacagtttcatgcactatgtggcttaaagtaacaagttccaatacatttaactcaaaacaatggcctaggcaaca |
101 |
Q |
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| T |
9266049 |
atgacgacgcagctgcacgcactatgtggcttaaagtaacaagttccaatacatttaactcaaaacaatggcctaggcaaca |
9266130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 214 - 322
Target Start/End: Original strand, 9266263 - 9266375
Alignment:
| Q |
214 |
aactaactatcagcatgcatcaattgttatccatcaaa----gagttcgatatacacacagttccagcataaaattacacatagttccagcatagactac |
309 |
Q |
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|||||||||||||||| ||||| ||||||||||||||| ||||| ||| ||||||||||||||||| ||||||||||| ||||||| |||| ||||| |
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| T |
9266263 |
aactaactatcagcatacatcagttgttatccatcaaattaagagtttgatctacacacagttccagcagaaaattacacacagttccaacataaactac |
9266362 |
T |
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| Q |
310 |
acacagttccagc |
322 |
Q |
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||||||||||||| |
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| T |
9266363 |
acacagttccagc |
9266375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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