View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7044_low_6 (Length: 272)
Name: NF7044_low_6
Description: NF7044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7044_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 38940128 - 38939877
Alignment:
| Q |
1 |
aaaacgaaaacgaaataaacgatgttaccgtaaagatgaaaaattcctaaaacctgaaacggaacgaagaaagattcatcagcagcatcataaacaaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38940128 |
aaaacgaaaacgaaataaacgatgttaccgtaaagatgaaaaattcctaaaacctgaaacggaacgaagaaagattcatcagcagcatcataaacaaaag |
38940029 |
T |
|
| Q |
101 |
aaaacgaagtaatgatgatgaatgttaccgtagagattcatcatcatcaacaaggattcacggaaaacgaaaaggaaaatagcgataacgaatgttacct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38940028 |
aaaacgaagtaatgatgatgaatgttaccgtagagattcatcatcatcaacaaggattcacggaaaacgaaaaggaaaatagcgataacgaatgttacct |
38939929 |
T |
|
| Q |
201 |
gaaaatcgctgaaagctgtaaccgtttttggatgagatgaagcaacggtgat |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38939928 |
gaaaatcgctgaaagctgtaaccgtttttggatgagatgaagcaacggtgat |
38939877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 55759553 - 55759755
Alignment:
| Q |
4 |
acgaaaacgaaataaacgatgttaccgtaaagatgaaaaattcctaaaacctgaaacggaacgaagaaagattcatcagcagcatcataaacaa-----a |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||| ||||||||| ||||| |
|
|
| T |
55759553 |
acgaaaacgaaataaacgatgttaccgtaaagatgaaaaatgcctaaaacctgaaatggaacgaaggaagattcat---cagcatcatgaacaagcattc |
55759649 |
T |
|
| Q |
99 |
agaaaacgaagtaatgatgatgaatgttaccgtagagattcatcatcatcaacaaggattcacggaaaacgaaaaggaaaatagcgataacgaatgttac |
198 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
55759650 |
ataaaacgaaataatgatgatgaatgttaccgtaaagattcatcatcatcaataaggagtca-tgaaaacgaaaa-gcaaatagcgataatgaatgttac |
55759747 |
T |
|
| Q |
199 |
ctgaaaat |
206 |
Q |
| |
|
| |||||| |
|
|
| T |
55759748 |
cagaaaat |
55759755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 55759435 - 55759517
Alignment:
| Q |
2 |
aaacgaaaacgaaataaacgatgttaccgtaaagatgaaaaattcctaaaacctgaaacggaacgaagaaagattcatcagca |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||| |
|
|
| T |
55759435 |
aaacgaaaacgaaataaacgatgttaccgtaaagatgaaaaatgcctaagacctgaaatcgaacgaaggaagattcatcagca |
55759517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University